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. 2011 Mar 16;27(9):1290–1298. doi: 10.1093/bioinformatics/btr136

Table 3.

Performance comparison on PC data

Method COSINE jAM Edge Local
No. of nodes selected 243 1669 4339 230
No. of edges (PPI) selected 102 3283 16 576 32
No. of PC genes recovered 23 133 373 18
Fold enrichment 1.262 1.063 1.147 1.044

Fold enrichment is calculated as follows: No. PC genes recovered / (400*No. ofnodes selected/5335).