1. punctuationally evolving key trait [60,61] |
X0 = 100; Xi changes (in both daughters) only at speciation events; changes are drawn from a normal distribution, μ = 0, σ = 50. If Xi becomes negative it is set to 0. λi = 0.001 + Xi/100 000 |
2. gradually evolving key trait [60,61] |
X0 = 100; X changes continuously by Brownian motion with μ = 0, σ = 5 per time unit; Xi and hence λi were assessed every 0.1 time units and at every speciation event. Negative Xi were truncated to 0. λi = 0.0001 + Xi /10 000 |
3. binary key trait |
X0 = 0, λ0 = 1, λ1 = 10. r01 = r10 = 0.05. States and rates were assessed every time unit and at every speciation event |
4. fast-evolving binary key trait |
X0 = 0, λ0 = 1, λ1 = 10. r01 = r10 = 10. States and rates were assessed every time unit and at every speciation event |
5. patency [61] |
λi = max(5–15ti, 0.6); ages and rates were assessed every 0.001 time units and at every speciation event |
6. spatial model |
Initial λ = 1. Ancestral species placed on an infinite square grid (i.e. each cell is adjacent to four others). Species occupy only one cell; they are selected at random to speciate but can do so only if they are adjacent to at least one empty cell |