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. 2011 Jul 18;6(7):e21691. doi: 10.1371/journal.pone.0021691

Table 4. Primer used to verify microarray experiments in liver tissue by qRT-PCR.

Gene name Probe set ID Sequence 5′ – 3′ Accession no. T(Inline graphicC) Size (bp)
DHCR7 Ssc.5455.1.S1_at For GCATGACACTGACTTCTTCTC Rev CCCACCTCCACTTTATTC BE232966 60 136
GADD45B Ssc.14764.1.A1_at For GGACTTAGACTTTGGGACTTG Rev GTAAGCCTCCCATCTCTCTT BF708594 60 140
HMGCR Ssc.16088.1.S1_at For GTGCTGGTCTGTTTTGATTT Rev TGCAGTGATTTGTTTTCTTG BP436947 60 159
NDUFA 4 Ssc.7315.1.S1_at For TCCTGCTTAGTCCCCGACCTT Rev ACAGTGCTGCTCCAGTACCTCC CF793329 60 164
NDUFS 7 Ssc.1681.1.S1_at For CGGCTACTACCACTACTCCT Rev ATCCGCAGTCTCTTCTCC CK455535 60 156
NDUFS 8 Ssc.2312.1.S1_at For AGTTTGTGAACATGCGTGAG Rev CTCAAATGGGTAGTTGATGG BI181006 60 152
PPARGC1A Ssc.16864.1.S1_at For GTAAATCTGCGGGATGATGG Rev TGGTGGAAGCAGGATCAAAG AB106108 60 208
PRKAA 1 Ssc.8107.1.A1_at For TTGTTAATTTCATAAACTTTGCTTC Rev GTGCAGCCTTGACATACTC BF712533 60 193
PRKAA 2 Ssc.16257.1.S1_at For TCTGTAATTCTGTTTTGCCTACG Rev AGCAAGAAGGTGATGCCAAG NM214266 60 168
RPL 10* Ssc.9130.1.A1_at For CTGTGTTCGTCTTTTCTTCC Rev TCATCCACTTTTGCCTTCT BI181297 60 199

DHCR7 - 7-dehydrocholesterol reductase; GADD45B - growth arrest and DNA-damage-inducible, beta; HMGCR - 3-hydroxy-3-methylglutaryl-coenzyme A reductase; NDUFA4 - NADH-ubiquinone oxidoreductase MLRQ subunit; NDUFS7 - NADH-ubiquinone oxidoreductase 20 kDa subunit; NDUFS8 - NADH-ubiquinone oxidoreductase 23 kDa subunit; PPARGC1A - Peroxisome proliferator activated receptor gamma coactivator 1 alpha; PRKAA1 – 5′-AMP-activated protein kinase, catalytic alpha-1 chain; PRKAA2 – 5′-AMP-activated protein kinase, catalytic alpha-2 chain; RPL10 - Ribosomal protein 10.

*House keeping gene.