Table 4. Primer used to verify microarray experiments in liver tissue by qRT-PCR.
Gene name | Probe set ID | Sequence 5′ – 3′ | Accession no. | T(C) | Size (bp) |
DHCR7 | Ssc.5455.1.S1_at | For GCATGACACTGACTTCTTCTC Rev CCCACCTCCACTTTATTC | BE232966 | 60 | 136 |
GADD45B | Ssc.14764.1.A1_at | For GGACTTAGACTTTGGGACTTG Rev GTAAGCCTCCCATCTCTCTT | BF708594 | 60 | 140 |
HMGCR | Ssc.16088.1.S1_at | For GTGCTGGTCTGTTTTGATTT Rev TGCAGTGATTTGTTTTCTTG | BP436947 | 60 | 159 |
NDUFA 4 | Ssc.7315.1.S1_at | For TCCTGCTTAGTCCCCGACCTT Rev ACAGTGCTGCTCCAGTACCTCC | CF793329 | 60 | 164 |
NDUFS 7 | Ssc.1681.1.S1_at | For CGGCTACTACCACTACTCCT Rev ATCCGCAGTCTCTTCTCC | CK455535 | 60 | 156 |
NDUFS 8 | Ssc.2312.1.S1_at | For AGTTTGTGAACATGCGTGAG Rev CTCAAATGGGTAGTTGATGG | BI181006 | 60 | 152 |
PPARGC1A | Ssc.16864.1.S1_at | For GTAAATCTGCGGGATGATGG Rev TGGTGGAAGCAGGATCAAAG | AB106108 | 60 | 208 |
PRKAA 1 | Ssc.8107.1.A1_at | For TTGTTAATTTCATAAACTTTGCTTC Rev GTGCAGCCTTGACATACTC | BF712533 | 60 | 193 |
PRKAA 2 | Ssc.16257.1.S1_at | For TCTGTAATTCTGTTTTGCCTACG Rev AGCAAGAAGGTGATGCCAAG | NM214266 | 60 | 168 |
RPL 10* | Ssc.9130.1.A1_at | For CTGTGTTCGTCTTTTCTTCC Rev TCATCCACTTTTGCCTTCT | BI181297 | 60 | 199 |
DHCR7 - 7-dehydrocholesterol reductase; GADD45B - growth arrest and DNA-damage-inducible, beta; HMGCR - 3-hydroxy-3-methylglutaryl-coenzyme A reductase; NDUFA4 - NADH-ubiquinone oxidoreductase MLRQ subunit; NDUFS7 - NADH-ubiquinone oxidoreductase 20 kDa subunit; NDUFS8 - NADH-ubiquinone oxidoreductase 23 kDa subunit; PPARGC1A - Peroxisome proliferator activated receptor gamma coactivator 1 alpha; PRKAA1 – 5′-AMP-activated protein kinase, catalytic alpha-1 chain; PRKAA2 – 5′-AMP-activated protein kinase, catalytic alpha-2 chain; RPL10 - Ribosomal protein 10.
*House keeping gene.