Table 1. Occurrence frequencies (%) of possible NoLS sequences (K/R-K/R-X-K/R) and of the twenty aminoacids at the X position in several NoLS-containing nucleolar proteins.
Motif | KKXK | KKXR | KRXK | KRXR | RRXR | RRXK | RXKR | RKXK | OFa | MFb | OF/MF |
Res. X | |||||||||||
G | 4.84 | - | - | - | - | - | - | - | 4.84 | 7.4 | 0.65 |
A | 1.61 | - | - | - | - | - | - | - | 1.61 | 7.4 | 0.22 |
V | 1.61 | - | - | - | - | - | - | - | 1.61 | 6.8 | 0.24 |
L | 3.23 | - | - | - | - | - | 1.61 | - | 4.84 | 7.6 | 0.64 |
I | - | - | - | 1.61 | - | - | - | - | 1.61 | 3.8 | 0.42 |
P | 3.23 | - | - | 1.61 | 4.84 | - | - | - | 9.68 | 5.0 | 1.94 |
S | - | - | 1.61 | 1.61 | 3.23 | - | - | - | 6.45 | 8.1 | 0.8 |
T | 1.61 | - | - | - | - | - | - | - | 1.61 | 6.2 | 0.26 |
C | - | - | - | - | - | - | - | - | 0.00 | 3.3 | 0.00 |
M | - | - | - | - | - | 1.61 | - | - | 1.61 | 1.8 | 0.90 |
N | 6.65 | - | 1.61 | 3.23 | 6.45 | - | - | - | 17.74 | 4.4 | 4.03 |
Q | - | 1.61 | - | - | 3.23 | - | - | - | 4.84 | 3.7 | 1.31 |
F | - | - | - | - | 1.61 | 1.61 | - | - | 3.23 | 4.0 | 0.81 |
Y | - | - | - | - | - | - | - | - | 0.00 | 3.3 | 0.00 |
W | - | - | - | - | 1.61 | - | - | - | 1.61 | 1.3 | 1.24 |
D | - | - | - | - | - | - | - | - | 0.00 | 5.9 | 0.00 |
E | - | - | - | - | - | - | - | - | 0.00 | 5.8 | 0.00 |
K | 6.45 | 4.84 | - | - | 3.23 | - | 1.61 | - | 16.13 | 7.2 | 2.24 |
R | - | 3.23 | 1.61 | - | 17.74 | - | - | - | 22.60 | 4.2 | 5.38 |
H | - | - | - | - | - | - | - | - | 0.00 | 2.9 | 0.00 |
29.03 | 9.68 | 4.84 | 8.06 | 41.93 | 3.23 | 3.23 | 0.00 | ||||
51.61 | 48.39 |
Among the eight possible sequence combinations (upper line), observed frequency (OF) of each aminoacid at the X position in NoLS present in 61 well-characterized nucleolar proteins and using for the analysis.
Mean frequency (MF) of each aminoacid observed in vertebrate proteins.