Table II. NDPK binding and activation of α-(Rp)-borano thymidine nucleotide analogues.
Nucleotide | Catalytic efficiency (M–1s–1)a | KD (µM)b | |
---|---|---|---|
TTP | – |
1 × 106 |
1.2 |
AZT triphosphate | – | 80 | 30.0 |
α-borano |
375 |
2.0 |
|
d4T triphosphate | – | 800 | 2.0 |
α-borano |
6000 |
0.25 |
|
TDP | – | 2 × 106 | – |
α-borano |
27 × 106 |
– |
|
AZT diphosphate | – | 200 | – |
α-borano |
2000 |
– |
|
d4T diphosphate |
– |
2600 |
– |
α-borano | ND | – |
aThe phosphotransfer reaction between human NDPK A and thymidine derivatives was studied in both directions as described in Figure 3. Note that the α-borano group increases the catalytic efficiency 4- to 10-fold.
bThe F64W-H122G variant of Dictyostelium NDPK is designed to measure NTP binding in the absence of phosphotransfer. Protein fluorescence (λexc = 310 nm, λem = 330 nm) increases by 50% upon binding saturating amounts of NTP at 20°C in 50 mM Tris–HCl, 5 mM MgCl2 and 75 mM KCl pH 7.5. KD values are estimated by fitting the binding curve to a quadratic equation.