Table 1. Details of microsatellite markers used to genotype Bristol's fox population and markers rejected for genotyping.
Marker | Sequence accession number | Locus source species | Forward primer sequence | Reverse primer sequence |
1DGN14 | NW_876272 | Canis familiaris | TCACACAAAGTGGGTAAGATGG | GATTATGGTGCTATCCCTCTGG |
1DGN3 | NW_876269 | Canis familiaris | TTTTTTCTGTAAACCTAAAGCTGC | GGAAAGGTACAGGCATGTAGTTGG |
1FH2017b c d | NW_876259 | Canis familiaris | AGCCTCTATAATCACGTGAGCC | CCCAGTACCACCTTCAGGAA |
1FH2131a | NW_876308 | Canis familiaris | ATGAAGCCTCACGCCAAG | TGATCACACTCATCTCCCCA |
1FH2174 | NW_876323 | Canis familiaris | CACCTGTTCTCATAGAATGCAG | AAGTCTCGCCTCGGGGTC |
1FH2201a | NW_876323 | Canis familiaris | ATCAACAATGCATGCCACAT | GAGAACAAATAAATGCAAGCCC |
1FH2226b d | NW_876323 | Canis familiaris | GGACTACCCCATTGCATTTG | GAATCGAGTCCCATATCGGG |
1FH2281 | NW_876277 | Canis familiaris | TGCTGGCACGTATACCAAGA | AGTGTGATGCAGAGGTTCCC |
1FH2289a | NW_876284 | Canis familiaris | CATGGTCTCAGGATCCTAGGA | CTAAGCATTCTCTCTGATGGTCTT |
1FH2309 | NW_876270 | Canis familiaris | GACTGAGTTCTTTCAGCACAGTG | GGCAGCCTTATTATTCATGGA |
1FH2316 | NW_876307 | Canis familiaris | AAATGGCCTGACGAATATGC | GTGCCATGGCATATGGTAAA |
1FH2348b d | NW_876256 | Canis familiaris | GCATGCAAAGGTGTTAATTGG | ACACAAGGAAGCTTTGGGG |
1FH2541 | NW_876307 | Canis familiaris | CGTATGAGTTGGTATAATCTCAGG | TGCTTTTCACCTCCCTCTTG |
1FH2658 | NW_876258 | Canis familiaris | TCTTAGAAATTGCTGGTGGG | TAAGAAACTGCCAGTCTGTGG |
1REN161A12 | NW_876308 | Canis familiaris | GCCAAATGTCTCAGATGGGT | TGTCCACAGCTCATGAAAGG |
1REN162B09 | NW_876269 | Canis familiaris | CAAACTTGACAGTCTTTTCAGGA | GCATTCAAGATGCACCAATG |
1REN69B24 | NW_876323 | Canis familiaris | TGTAGGGCAGTGAATAAAAG | GCCTGGCTCAAGCTCACAAGT |
1V142 | DQ118707 | Vulpes vulpes | AAGCAGATCCTAGAGCAGCA | CCCCACAGTTTAGAAATATCTGC |
1V374 | DQ118709 | Vulpes vulpes | TACACACAGGAAGTAATGGGG | GACAGAAAGACAGAAGGCTTAG |
1V402c d | DQ118717 | Vulpes vulpes | GGGTAATTCATCCAGTGCCTT | TATGCAAACATGCAAACATGC |
1V468 | DQ118718 | Vulpes vulpes | TCTCCCACCCAAATCTCTTG | GCATTCAAGATGCACCAATG |
1V502b c d | DQ118722 | Vulpes vulpes | ACCCAAGTGTCCTCCATAGAT | TGGCCAAGTACTCTTCCACT |
1V602 | DQ118723 | Vulpes vulpes | CAGCCTGGACTACAATTCTCTTT | CCCCAAGTCTTTTGTCCAGA |
1V622a | DQ8730 | Vulpes vulpes | TTTTTTGAAAAGCACACCC | TGCTTTGTGTATCTTTTCTTTC |
2aht130 | NW_876266 | Canis familiaris | CCTCTCCTGGTAATTGCTGC | TGGAACACTGGTCCCCAG |
2c2001 | L78573 | Canis familiaris | TCCTCCTCTTCTTTCCATTGG | TGAACAGAGTTAAGGATAGACACG |
2c2006 | L78577 | Canis familiaris | TGGGGGCGTTAAGAGTAATG | CTAGGCCTAAACCCCTGAGC |
2c2010 | L78579 | Canis familiaris | AAATGGAACAGTTGAGCATGC | CCCCTTACAGCTTCATTTTCC |
2c2017 | L78583 | Canis familiaris | AGCCTCTATAATCACGTGAGCC | CCCAGTACCACCTTCAGGAA |
2c2054 | L78589 | Canis familiaris | GCCTTATTCATTGCAGTTAGGG | ATGCTGAGTTTTGAACTTTCCC |
2c2079 | L78596 | Canis familiaris | CAGCCGAGCACATGGTTT | ATTGATTCTGATATGCCCAGC |
2c2088 | L78599 | Canis familiaris | CCCTCTGCCTACATCTCTGC | TAGGGCATGCATATAACCAGC |
2ucb466 | L27191 | Canis familiaris | TCTGGATTGTGGTCACAACC | ACTGGACACTTCTTTTCAGACG |
2ucb646 | L29310 | Canis familiaris | TGGGATTCCAAAATGTTTTT | TCCCAGGATTAAGTCCCACA |
markers tested for establishing parentage in the high-density sample.
markers used for establishing parentage in the low-density sample.
marker not used in genotyping due to poor amplification.
marker not used in genotyping due to high frequency of nulls alleles.
marker not used in genotyping due to linkage disequilibrium.
marker not used in genotyping due to violations of Hardy Weinberg equilibrium.