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. 2011 Jul 20;6(7):e22145. doi: 10.1371/journal.pone.0022145

Table 1. Details of microsatellite markers used to genotype Bristol's fox population and markers rejected for genotyping.

Marker Sequence accession number Locus source species Forward primer sequence Reverse primer sequence
1DGN14 NW_876272 Canis familiaris TCACACAAAGTGGGTAAGATGG GATTATGGTGCTATCCCTCTGG
1DGN3 NW_876269 Canis familiaris TTTTTTCTGTAAACCTAAAGCTGC GGAAAGGTACAGGCATGTAGTTGG
1FH2017b c d NW_876259 Canis familiaris AGCCTCTATAATCACGTGAGCC CCCAGTACCACCTTCAGGAA
1FH2131a NW_876308 Canis familiaris ATGAAGCCTCACGCCAAG TGATCACACTCATCTCCCCA
1FH2174 NW_876323 Canis familiaris CACCTGTTCTCATAGAATGCAG AAGTCTCGCCTCGGGGTC
1FH2201a NW_876323 Canis familiaris ATCAACAATGCATGCCACAT GAGAACAAATAAATGCAAGCCC
1FH2226b d NW_876323 Canis familiaris GGACTACCCCATTGCATTTG GAATCGAGTCCCATATCGGG
1FH2281 NW_876277 Canis familiaris TGCTGGCACGTATACCAAGA AGTGTGATGCAGAGGTTCCC
1FH2289a NW_876284 Canis familiaris CATGGTCTCAGGATCCTAGGA CTAAGCATTCTCTCTGATGGTCTT
1FH2309 NW_876270 Canis familiaris GACTGAGTTCTTTCAGCACAGTG GGCAGCCTTATTATTCATGGA
1FH2316 NW_876307 Canis familiaris AAATGGCCTGACGAATATGC GTGCCATGGCATATGGTAAA
1FH2348b d NW_876256 Canis familiaris GCATGCAAAGGTGTTAATTGG ACACAAGGAAGCTTTGGGG
1FH2541 NW_876307 Canis familiaris CGTATGAGTTGGTATAATCTCAGG TGCTTTTCACCTCCCTCTTG
1FH2658 NW_876258 Canis familiaris TCTTAGAAATTGCTGGTGGG TAAGAAACTGCCAGTCTGTGG
1REN161A12 NW_876308 Canis familiaris GCCAAATGTCTCAGATGGGT TGTCCACAGCTCATGAAAGG
1REN162B09 NW_876269 Canis familiaris CAAACTTGACAGTCTTTTCAGGA GCATTCAAGATGCACCAATG
1REN69B24 NW_876323 Canis familiaris TGTAGGGCAGTGAATAAAAG GCCTGGCTCAAGCTCACAAGT
1V142 DQ118707 Vulpes vulpes AAGCAGATCCTAGAGCAGCA CCCCACAGTTTAGAAATATCTGC
1V374 DQ118709 Vulpes vulpes TACACACAGGAAGTAATGGGG GACAGAAAGACAGAAGGCTTAG
1V402c d DQ118717 Vulpes vulpes GGGTAATTCATCCAGTGCCTT TATGCAAACATGCAAACATGC
1V468 DQ118718 Vulpes vulpes TCTCCCACCCAAATCTCTTG GCATTCAAGATGCACCAATG
1V502b c d DQ118722 Vulpes vulpes ACCCAAGTGTCCTCCATAGAT TGGCCAAGTACTCTTCCACT
1V602 DQ118723 Vulpes vulpes CAGCCTGGACTACAATTCTCTTT CCCCAAGTCTTTTGTCCAGA
1V622a DQ8730 Vulpes vulpes TTTTTTGAAAAGCACACCC TGCTTTGTGTATCTTTTCTTTC
2aht130 NW_876266 Canis familiaris CCTCTCCTGGTAATTGCTGC TGGAACACTGGTCCCCAG
2c2001 L78573 Canis familiaris TCCTCCTCTTCTTTCCATTGG TGAACAGAGTTAAGGATAGACACG
2c2006 L78577 Canis familiaris TGGGGGCGTTAAGAGTAATG CTAGGCCTAAACCCCTGAGC
2c2010 L78579 Canis familiaris AAATGGAACAGTTGAGCATGC CCCCTTACAGCTTCATTTTCC
2c2017 L78583 Canis familiaris AGCCTCTATAATCACGTGAGCC CCCAGTACCACCTTCAGGAA
2c2054 L78589 Canis familiaris GCCTTATTCATTGCAGTTAGGG ATGCTGAGTTTTGAACTTTCCC
2c2079 L78596 Canis familiaris CAGCCGAGCACATGGTTT ATTGATTCTGATATGCCCAGC
2c2088 L78599 Canis familiaris CCCTCTGCCTACATCTCTGC TAGGGCATGCATATAACCAGC
2ucb466 L27191 Canis familiaris TCTGGATTGTGGTCACAACC ACTGGACACTTCTTTTCAGACG
2ucb646 L29310 Canis familiaris TGGGATTCCAAAATGTTTTT TCCCAGGATTAAGTCCCACA
1

markers tested for establishing parentage in the high-density sample.

2

markers used for establishing parentage in the low-density sample.

a

marker not used in genotyping due to poor amplification.

b

marker not used in genotyping due to high frequency of nulls alleles.

c

marker not used in genotyping due to linkage disequilibrium.

d

marker not used in genotyping due to violations of Hardy Weinberg equilibrium.