Table 2. Configurational entropy of backbone atoms (N, C and Ca) for the KD-AID and mutants.
Protein | Cleft (27–175) | Activ. Loop (176–206) | Remain KD (210–297) | KD (27–297) | AID (298–325) | All (27–325) |
KD-AID | 20.71 (0.21) | 29.07 (0.21) | 21.13 (0.17) | 21.07 (0.09) | 23.27 (0.17) | 20.97 (0.09) |
Mutant 1 open | 19.30 (0.08) | 26.87 (0.84) | 21.53 (0.09) | 20.23 (0.12) | 22.37 (0.34) | 20.17 (0.05) |
Mutant 2 open | 20.07 (0.17) | 25.63 (0.40) | 21.33 (0.05) | 20.4 (0.08) | 23.30 (0.65) | 20.40 (0.08) |
Mutant 3 open | 19.93 (0.12) | 24.20 (0.36) | 21.53 (0.31) | 20.33 (0.17) | 21.60 (0.14) | 20.13 (0.17) |
Mutant 2 closed | 20.23 (0.25) | 28.10 (0.78) | 21.40 (0.22) | 20.70 (0.22) | 22.43 (0.33) | 20.50 (0.22) |
Mutant 3 closed | 20.03 (0.19) | 27.27 (0.94) | 21.27 (0.21) | 20.33 (0.46) | 21.30 (0.16) | 19.97 (0.56) |
The calculation is based on trajectories of 700 ns each and is in units of kJ/mole/K per atom.