Table 1.
List of HLA and non-HLA SNPs from the Fellay et al. [11] 'top hits' among European Americans (EA) and the Pelak et al. [13] 'top hits' among African Americans (AA) examined in this study.
| Chromosome | Position in bases | Nearest Gene | |
|---|---|---|---|
| HLA SNPs - EA | |||
| rs2395029 | 6 | 31,539,759 | HCP5 |
| rs9264942 | 6 | 31,332,359 | HLA-C |
| rs259919 | 6 | 30,133,482 | ZNRD1 |
| rs9468692 | 6 | 30,227,869 | TRIM40 |
| rs9266409 | 6 | 31,444,547 | HLA-B |
| rs8192591 | 6 | 32,293,774 | NOTCH4 |
| HLA SNPs - AA | |||
| rs2523608 | 6 | 31,430,538 | HLA-B |
| rs34548063 | 6 | 32,047,802 | STK19, DOM3Z |
| rs2523933 | 6 | 30,040,271 | HLA-A, HCG9 |
| rs2844538 | 6 | 31,456,858 | HLA-B |
| rs2596503 | 6 | 31,428,789 | HLA-B |
| Non-HLA SNPs - EA | |||
| rs12185555 | 2 | 227,559,317 | IRS1 |
| rs12557137 | X | 31,348,807 | DMD |
| rs9677779 | 2 | 71,903,036 | DYSF |
| rs11800642 | 1 | 212,909,744 | NSL1 |
| rs3735118 | 7 | 2,944,317 | CARD11 |
| rs7904001 | 10 | 66,762,723 | None within 1 Mb |
| rs16959323 | 17 | 10,006,097 | GAS7 |
| rs5954635 | X | 141,450,842 | MAGEC2 |
| rs10073652 | 5 | 12,786,980 | None within 1 Mb |
| rs6640729 | X | 11,346,716 | ARHGAP6 |
| Non-HLA SNPs - AA | |||
| rs454422 | 20 | 5,891,693 | MCM8 |
| rs6948404 | 7 | 36,577,018 | AOAH |
| rs558718 | 19 | 7,815,883 | EVI5L |
| rs1357339 | 11 | 80,532,023 | None within 1 Mb |
| rs1413191 | 13 | 92,011,477 | GPC5 |
| rs2593321 | 3 | 22,097,400 | ZNF659 |
| rs1116084 | 8 | 22,406,934 | PPP3CC |
| rs2789066 | 6 | 121,141,836 | C6orf170 |
| rs430374 | 18 | 42,499,453 | ST8SIA5 |
| rs11652146 | 17 | 44,774,660 | ZNF652 |