Table 3.
Clade | n | h | Hd | M(S) | π | Tajima's D | Fs | RI | SSD |
---|---|---|---|---|---|---|---|---|---|
Clade 1 | 14 | 13 | 0.989 | 191(187) | 0.026 | 0.378 | 0.585 | 0.020 | 0.033* |
1a | 2 | 2 | 1.0 | 38(38) | 0.016 | NA | NA | NA | NA |
1b | 3 | 3 | 1.0 | 7(7) | 0.002 | NA | NA | NA | NA |
1c | 9 | 8 | 0.972 | 19(19) | 0.003 | -0.305 | -2.005 | 0.063 | 0.054* |
Clade 2 | 8 | 7 | 0.893 | 12(12) | 0.001 | -1.576* | -2.870* | 0.050 | 0.010 |
Clade 3 | 19 | 15 | 0.965 | 170(164) | 0.022 | 0.617 | 2.306 | 0.023 | 0.024 |
3a | 4 | 4 | 1.0 | 4(4) | 0.001 | -0.780 | -1.872* | 0.222 | 0.042 |
3b | 3 | 1 | 0.0 | 0(0) | 0.000 | NA | NA | NA | NA |
3c | 10 | 8 | 0.933 | 54(53) | 0.008 | 0.017 | 1.044 | 0.167 | 0.053 |
3d | 2 | 2 | 1.0 | 4(4) | 0.002 | NA | NA | NA | NA |
Clade 4 | 48 | 43 | 0.996 | 213(206) | 0.017 | -0.498 | -8.730* | 0.002 | 0.009* |
4a | 29 | 24 | 0.988 | 119(119) | 0.009 | -1.006 | -3.512 | 0.005 | 0.010 |
4b | 14 | 14 | 1.0 | 30(30) | 0.003 | -1.472 | -9.261* | 0.015 | 0.006 |
4c | 5 | 5 | 1.0 | 47(47) | 0.011 | 1.618 | 0.898 | 0.280 | 0.190* |
Clade 5 | 18 | 13 | 0.948 | 87(87) | 0.013 | 0.923 | 1.974 | 0.027 | 0.032 |
5a | 11 | 7 | 0.873 | 18(18) | 0.002 | -1.597 | -0.929 | 0.113 | 0.036 |
5b | 7 | 6 | 0.952 | 35(35) | 0.006 | 0.344 | 0.894 | 0.034 | 0.023 |
Clade 6 | 4 | 2 | 0.500 | 1(1) | < 0.001 | -0.612 | 0.172 | 0.250 | 0.022 |
Clade 7 | 55 | 29 | 0.937 | 127(123) | 0.005 | -1.974* | -4.354 | 0.026 | 0.016 |
7a | 3 | 3 | 1.0 | 5(5) | 0.001 | NA | NA | NA | NA |
7b | 52 | 26 | 0.930 | 68(68) | 0.002 | -2.306* | -11.161* | 0.033 | 0.015 |
Clade 8 | 2 | 1 | 0.0 | 0(0) | 0.000 | NA | NA | NA | NA |
Clade 9 | 70 | 42 | 0.943 | 205(201) | 0.023 | 1.184 | 2.106 | 0.011 | 0.025 |
9a | 24 | 16 | 0.913 | 48(48) | 0.005 | -0.354 | -1.561 | 0.021 | 0.022 |
9b | 1 | 1 | NA | NA | NA | NA | NA | NA | NA |
9c | 9 | 8 | 0.972 | 17(17) | 0.003 | -0.069 | -2.070 | 0.036 | 0.020 |
9d | 36 | 17 | 0.821 | 24(24) | 0.002 | -0.851 | -5.160* | 0.055 | 0.038 |
Overall | 238 | 165 | 0.990 | 715(625) | 0.044 |
n = sample size, h = number of haplotypes, Hd = haplotypic diversity, M = total number of mutations, S = number of segregating (polymorphic) sites, π = nucleotide diversity, Fs = Fu's F statistic, RI = raggedness index, SSD = sum of squared deviations. Asterisks indicate significant Tajima's D, Fu's F statistic, RI and SSD values.