Table 1.
Bioinformatically validated SNPs
| 17573 Sanger | 17573 SOLiD | r1766 | r02120 | Sub-species comparison | MamuSNP | ENCODE | dbSNP | |
|---|---|---|---|---|---|---|---|---|
| 17573 Sanger | ||||||||
| 17573 SOLiD | 1,056,266 | |||||||
| r1766 | 22,665 | 412,920 | ||||||
| r02120 | 5,734 | 103,323 | 328,910 | |||||
| Sub-species comparison | 4,185 | 6,519 | 1,070 | 226 | ||||
| MamuSNP | 389 | 781 | 159 | 33 | 19 | |||
| ENCODE | 29 | 76 | 14 | 7 | 0 | 1 | ||
| dbSNP | 11 | 12 | 5 | 0 | 0 | 0 | 0 | |
| egeno.assembly.hets | -- | 421,234 | 64,584 | 41,607 | 34,339 | -- | -- | -- |
| egeno.17573.SOLiD | -- | -- | 109,485 | 61,941 | 9 | -- | -- | -- |
| egeno.r1766.frag | -- | 155,454 | -- | 93,016 | 17 | -- | -- | -- |
| egeno.r02120.frag | -- | 41,836 | 69,424 | -- | 3 | -- | -- | -- |
| egeno.sub-species comp | -- | 677 | 743 | 443 | -- | -- | -- | -- |
Unique non-overlapping validated SNPs identified in each pair-wise comparison are displayed. Validated SNPs were determined on the basis of both alleles at a genomic location being identified in at least two data sets and one of either multiple animals or multiple chemistries. Validated SNPs that fit into multiple cells were represented in the left-most appropriate cell.