Table 2. Type I error rates (in percentage) of the five tests based on simulation set 2.
| μ = 1 | μ = 2 | |||||||||||||
| S | L | Joint | FTSA | AFTSA |
|
|
Joint | FTSA | AFTSA |
|
 . |
|||
| 400 | 200 | 3.7 | 3.3 | 4.2 | 69.9 | 5.41605 | 4.3 | 4.5 | 4.3 | 80.3 | 6.53089 | |||
| 400 | 3.4 | 4.2 | 4.9 | 69.9 | 5.15228 | 3.5 | 3.9 | 4.2 | 80.4 | 5.4674 | ||||
| 800 | 4.1 | 2.8 | 4.6 | 69.9 | 5.00927 | 3.3 | 3.1 | 4.5 | 80.3 | 5.0182 | ||||
| 600 | 200 | 3.6 | 2.9 | 3.3 | 75.3 | 5.5889 | 4.0 | 3.2 | 4.4 | 83.9 | 7.29293 | |||
| 400 | 3.9 | 3.8 | 3.1 | 75.3 | 5.18648 | 4.1 | 3.6 | 4.0 | 83.9 | 5.6435 | ||||
| 800 | 3.4 | 4.4 | 4.5 | 75.3 | 5.00261 | 4.2 | 4.1 | 4.9 | 83.9 | 5.01144 | ||||
| 800 | 200 | 3.5 | 3.9 | 3.6 | 78.5 | 5.77735 | 3.7 | 3.9 | 3.1 | 85.9 | 7.99526 | |||
| 400 | 4.5 | 4.6 | 4.6 | 78.4 | 5.20667 | 4.8 | 5.2 | 5.7 | 85.9 | 5.81495 | ||||
| 800 | 3.7 | 3.2 | 3.8 | 78.4 | 5.01154 | 3.4 | 4.1 | 3.1 | 85.9 | 5.01228 | ||||
Significant level is 5%.
Note: S denotes sample size in trios; L denotes the number of genomic markers used to control population stratification.