Table 3. Type I error rates (in percentage) of the five tests based on simulation set 3.
| μ = 1 | μ = 2 | ||||||||||||||
| S | L | Joint | FTSA | AFTSA |
|
|
Joint | FTSA | AFTSA |
|
|
||||
| 400 | 200 | 4.1 | 2.9 | 3.3 | 5.5 | 5.31204 | 4.2 | 3.6 | 3.6 | 7.0 | 6.06805 | ||||
| 400 | 3.8 | 4 | 4.5 | 5.5 | 5.17645 | 4.2 | 3.8 | 3.8 | 7.0 | 5.56551 | |||||
| 800 | 3.4 | 3.8 | 3.3 | 5.5 | 5.01086 | 4.2 | 3.8 | 3.5 | 7.0 | 5.01277 | |||||
| 600 | 200 | 4.4 | 3.2 | 3.8 | 5.8 | 5.34633 | 6.5 | 4.7 | 4.7 | 8.1 | 6.37518 | ||||
| 400 | 4.7 | 4.1 | 2.9 | 5.8 | 5.23698 | 6.5 | 5.3 | 2.9 | 8.1 | 5.75471 | |||||
| 800 | 2.9 | 4.1 | 2.8 | 5.8 | 5.00985 | 4.1 | 7.1 | 3.5 | 8.1 | 5.01071 | |||||
| 800 | 200 | 3.5 | 3.8 | 4.2 | 6.0 | 5.48167 | 5.9 | 5 | 5.4 | 9.1 | 6.85698 | ||||
| 400 | 3.7 | 4.2 | 3.4 | 5.7 | 5.30941 | 5.0 | 6.6 | 4.4 | 8.7 | 6.01961 | |||||
| 800 | 3.3 | 3.6 | 3 | 6.1 | 5.01124 | 5 | 5.1 | 4.4 | 9.1 | 5.01138 | |||||
Significant level is 5%.
Note: S denotes sample size in trios; L denotes the number of genomic markers used to control population stratification.