Table 1. Polymorphisms in human ALK significantly associated with altered behavioral responses to alcohol.
SNP ID | MAF | SNP Position | Amino Acid | Phenotype | Genotypes Tested | n | Value | p-value | q-value |
rs56132472 | 0.10 | Exon 29 | T1446T | BSL | HOM1 vs. HET | 329 | 0.39 | 0.0011 | 0.0310 |
rs17007646 | 0.13 | Intron 28 | non-coding | BSL | HOM1 vs. HET | 330 | 0.33 | 0.0028 | 0.0387 |
rs1881421 | 0.42 | Exon 29 | D1529E | BSL | HOM1 vs. HET | 323 | 0.24 | 0.0126 | 0.1159 |
rs17007646 | 0.13 | Intron 28 | non-coding | BSA | HOM1 vs. HOM2 | 329 | 0.48 | 0.0255 | 0.1245 |
rs56132472 | 0.10 | Exon 29 | T1446T | BSA | HOM1 vs. HET | 328 | 0.25 | 0.0269 | 0.1245 |
rs4622670 | 0.30 | Intron 20 | non-coding | SHAS | HOM1 vs. HOM2 | 326 | −0.40 | 0.0270 | 0.1245 |
rs17007646 | 0.13 | Intron 28 | non-coding | SHAS | HOM1 vs. HOM2 | 333 | 0.53 | 0.0434 | 0.1716 |
Columns (from left to right) show the single nucleotide polymorphism identifier (SNP ID), minor allele frequency (MAF), the position of the polymorphism in ALK (SNP position), the amino acid change in the ALK protein (Amino Acid), the associated alcohol-related phenotype (Phenotype), the genotypic classes compared for association (Genotypes Tested), the number of subjects in the statistical test (n), the quantitative effect of being homozygous for the common allele vs. the other genotypic classes in the previous column, expressed in standard deviations (Value), the p-value rejecting the null hypothesis (genotype does not affect phenotype, p -value), and the FDR q-value multiple test correction.