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. Author manuscript; available in PMC: 2012 Dec 1.
Published in final edited form as: Biometrics. 2011 Apr 19;67(4):1271–1284. doi: 10.1111/j.1541-0420.2011.01598.x

Table 2.

Results of the simulation study described in Section 5. Displayed are the empirical size (c = 0) and power (c = 2,…, 8) of the proposed garrote kernel machine (GKM) test using the two-way interaction kernel (KInt), the Gaussian kernel (KGauss), the PCA based test statistics Tn and Tn (KGauss,PCA1 and KGauss,PCA2) using the Gaussian kernel as in Section 3.3, and the usual F-test for different settings with n = 100 and M = 8. Also presented, for the linear cases (h1(·) and h2(·)), are the results for the ideal classical score tests assuming the direction of the alternative is known. The nominal level was set be α = 0.05.

Test r = 0.0 r = 0.2 r = 0.5

c = 0 c = 2 c = 4 c = 6 c = 8 c = 0 c = 2 c = 4 c = 6 c = 8 c = 0 c = 2 c = 4 c = 6 c = 8
h1(·) F-test 0.057 0.160 0.606 0.934 0.996 0.054 0.173 0.546 0.911 0.995 0.053 0.116 0.372 0.739 0.940
KInt 0.053 0.198 0.658 0.952 0.993 0.052 0.233 0.691 0.954 0.997 0.055 0.149 0.429 0.773 0.948
KGauss 0.050 0.402 0.943 1.000 1.000 0.051 0.443 0.938 0.998 1.000 0.051 0.332 0.803 0.983 0.999
KGauss,PCA1 0.051 0.396 0.912 0.998 1.000 0.058 0.385 0.895 0.994 1.000 0.051 0.315 0.796 0.954 0.998
KGauss,PCA2 0.051 0.406 0.922 0.998 1.000 0.054 0.405 0.904 0.996 1.000 0.051 0.321 0.799 0.961 0.991
Score test 0.050 0.441 0.947 1.000 1.000 0.054 0.454 0.943 0.996 1.000 0.048 0.335 0.862 0.988 0.998

h2(·) F-test 0.057 0.197 0.713 0.981 0.999 0.054 0.259 0.808 0.993 1.000 0.053 0.228 0.736 0.970 1.000
KInt 0.053 0.223 0.758 0.967 0.998 0.052 0.431 0.916 0.998 1.000 0.055 0.453 0.93 0.998 1.000
KGauss 0.050 0.398 0.921 0.995 0.999 0.051 0.456 0.918 0.995 0.998 0.051 0.469 0.816 0.983 0.998
KGauss,PCA1 0.051 0.389 0.910 0.992 1.000 0.058 0.420 0.901 0.992 0.999 0.051 0.426 0.857 0.991 0.999
KGauss,PCA2 0.051 0.407 0.912 0.997 1.000 0.054 0.445 0.914 0.991 1.000 0.051 0.421 0.849 0.983 0.992
Score test 0.050 0.556 0.961 0.998 1.000 0.054 0.805 0.995 0.999 1.000 0.048 0.991 1.000 1.000 1.000

h3(·) F-test 0.051 0.095 0.214 0.462 0.701 0.057 0.069 0.138 0.248 0.443 0.051 0.053 0.085 0.123 0.203
KInt 0.045 0.099 0.234 0.513 0.758 0.046 0.103 0.213 0.380 0.612 0.043 0.069 0.093 0.167 0.280
KGauss 0.052 0.174 0.535 0.848 0.968 0.050 0.196 0.474 0.748 0.931 0.051 0.155 0.332 0.559 0.740
KGauss,PCA1 0.053 0.173 0.548 0.820 0.966 0.051 0.197 0.443 0.706 0.914 0.052 0.135 0.295 0.567 0.720
KGauss,PCA2 0.053 0.171 0.534 0.833 0.971 0.051 0.189 0.451 0.712 0.921 0.052 0.143 0.292 0.541 0.731

h4(·) F-test 0.051 0.068 0.162 0.360 0.662 0.057 0.069 0.115 0.244 0.414 0.051 0.060 0.09 0.132 0.219
KInt 0.045 0.067 0.180 0.428 0.700 0.046 0.097 0.196 0.407 0.639 0.043 0.084 0.119 0.260 0.409
KGauss 0.052 0.143 0.454 0.798 0.963 0.050 0.162 0.389 0.654 0.870 0.051 0.134 0.259 0.464 0.638
KGauss,PCA1 0.053 0.143 0.402 0.744 0.947 0.051 0.142 0.344 0.603 0.828 0.052 0.116 0.234 0.415 0.602
KGauss,PCA2 0.053 0.142 0.442 0.787 0.952 0.051 0.136 0.371 0.623 0.837 0.052 0.121 0.255 0.485 0.646