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. Author manuscript; available in PMC: 2012 Dec 1.
Published in final edited form as: Biometrics. 2011 Apr 19;67(4):1271–1284. doi: 10.1111/j.1541-0420.2011.01598.x

Table 4.

Results of the simulation study described in Section 5. Displayed are the empirical size (c = 0) and power (c = 2,…, 8) of the proposed garrote kernel machine (GKM) test using the two-way interaction kernel (KInt), the Gaussian kernel (KGauss), and the PCA based test statistics Tn and Tn (KGauss,PCA1 and KGauss,PCA2) using the Gaussian kernel as in Section 3.3 for different settings with n = 200 and M = 20. Also presented, for the linear cases (h1(·) and h2(·)), are the results for the ideal classical score tests assuming the direction of the alternative is known. The nominal level was set be α = 0.05. Note that in this case, F-test is not computable.

Test r = 0.0 r = 0.2 r = 0.5

c = 0 c = 2 c = 4 c = 6 c = 8 c = 0 c = 2 c = 4 c = 6 c = 8 c = 0 c = 2 c = 4 c = 6 c = 8
h1(·) KInt 0.047 0.068 0.147 0.253 0.436 0.039 0.060 0.123 0.217 0.361 0.049 0.060 0.103 0.193 0.310
KGauss 0.055 0.578 0.988 1.000 1.000 0.055 0.456 0.948 0.999 1.000 0.051 0.348 0.821 0.988 0.999
KGauss,PCA1 0.055 0.558 0.982 1.000 1.000 0.053 0.425 0.925 1.000 1.000 0.051 0.286 0.779 0.983 0.998
KGauss,PCA2 0.055 0.578 0.987 1.000 1.000 0.052 0.448 0.937 1.000 1.000 0.049 0.314 0.811 0.985 0.999
Score test 0.055 0.768 1.000 1.000 1.000 0.053 0.712 0.996 1.000 1.000 0.052 0.607 0.978 1.000 1.000

h2(·) KInt 0.047 0.120 0.376 0.670 0.847 0.039 0.812 1.000 1.000 1.000 0.049 1.000 1.000 1.000 1.000
KGauss 0.055 0.582 0.967 0.999 1.000 0.055 0.942 1.000 1.000 1.000 0.051 0.998 1.000 1.000 1.000
KGauss,PCA1 0.055 0.578 0.963 0.999 1.000 0.053 0.969 1.000 1.000 1.000 0.051 0.999 1.000 1.000 1.000
KGauss,PCA2 0.055 0.578 0.967 1.000 1.000 0.052 0.967 1.000 1.000 1.000 0.049 0.999 1.000 1.000 1.000
Score test 0.055 0.827 0.992 0.999 1.000 0.053 0.996 1.000 1.000 1.000 0.052 1.000 1.000 1.000 1.000

h3(·) KInt 0.038 0.051 0.07 0.090 0.133 0.050 0.045 0.045 0.047 0.051 0.047 0.045 0.057 0.067 0.087
KGauss 0.055 0.192 0.594 0.896 0.987 0.054 0.193 0.435 0.695 0.912 0.055 0.127 0.272 0.443 0.623
KGauss,PCA1 0.055 0.188 0.581 0.889 0.986 0.054 0.169 0.379 0.644 0.857 0.055 0.099 0.198 0.372 0.540
KGauss,PCA2 0.055 0.194 0.604 0.901 0.987 0.054 0.184 0.414 0.672 0.894 0.055 0.106 0.239 0.407 0.600

h4(·) KInt 0.038 0.044 0.173 0.217 0.312 0.05 0.077 0.104 0.153 0.242 0.047 0.060 0.106 0.138 0.153
KGauss 0.055 0.112 0.375 0.784 0.946 0.054 0.153 0.438 0.880 0.994 0.055 0.152 0.529 0.955 1.000
KGauss,PCA1 0.055 0.110 0.383 0.782 0.946 0.054 0.105 0.396 0.708 0.905 0.055 0.109 0.323 0.697 0.889
KGauss,PCA2 0.055 0.110 0.391 0.798 0.952 0.054 0.150 0.390 0.811 0.906 0.055 0.114 0.311 0.694 0.919