Table 2.
A list of 19 UP CIFH contigs with similarity to pattern recognition receptors*
| CIFH contig # | Original read # | RA or ARN | BLAST results | |||||
|---|---|---|---|---|---|---|---|---|
| CF | CH | IF | IH | Total | IF/CF | IH/CH | ||
| 00131 | 11 | 41 | 137 | 61 | 250 | 6.4 | 1.8 | gi|198430641|ref|XP_002123478.1| hemicentin 1, Ig domains [Ciona intestinalis] |
| 00575 | 3 | 0 | 259 | 5 | 267 | 44.0 | 5.9 | gi|154240658|dbj|BAF74637.1| peptidoglycan recognition protein-D [Samia cynthiaricini] |
| 01326 | 1 | 9 | 19 | 70 | 99 | 9.7 | 9.2 | gi|52782739|sp|Q8ISB6.1|BGBP2_MANSE β-1,3-glucan recognition protein 2 |
| 03442 | 1 | 12 | 1468 | 40 | 1521 | 748.5 | 4.0 | gi|511297|gb|AAC46916.1| hemolin [Manduca sexta] |
| 04775 | 1 | 0 | 89 | 0 | 90 | 45.4 | 0.0 | gi|237869126|gb|AAF91316.3|AF242202_1 immulectin-2 [Manduca sexta] |
| 04808 | 0 | 0 | 426 | 2 | 428 | 217.2 | 2.4 | gi|237861314|gb|AAV41237.2| immulectin-4 [Manduca sexta] |
| 06630 | 2 | 40 | 44 | 77 | 163 | 11.2 | 2.3 | gi|55139125|gb|AAV41236.1| immulectin-3 [Manduca sexta] |
| 08247 | 27 | 2 | 122 | 18 | 169 | 2.3 | 10.7 | gi|208972535|gb|ACI32828.1| β-1,3-glucan recognition protein 3 [Helicoverpa armigera] |
| 08467 | 0 | 0 | 113 | 0 | 113 | 57.6 | 0.0 | gi|112983866|ref|NP_001036858.1| peptidoglycan recognition protein-6 [Bombyx mori] |
| 11458 | 0 | 0 | 55 | 0 | 55 | 28.0 | 0.0 | gi|148298818|ref|NP_001091784.1| multi-binding protein [Bombyx mori] |
| 11845 | 0 | 2 | 9 | 17 | 28 | 4.6 | 10.1 | gi|18202160|sp|O76537.1|PGRP_TRINI peptidoglycan recognition protein |
| 13190 | 15 | 0 | 117 | 9 | 141 | 4.0 | 10.7 | gi|27733423|gb|AAO21509.1|AF413068_1 peptidoglycan recognition protein 1A [Manduca sexta] |
| 14104 | 14 | 0 | 173 | 13 | 200 | 6.3 | 15.4 | gi|27733423|gb|AAO21509.1|AF413068_1 peptidoglycan recognition protein 1A [Manduca sexta] |
| 14278 | 1 | 34 | 17 | 179 | 231 | 8.7 | 6.3 | gi|83583693|gb|ABC24706.1| hemicentin-like protein 1, Ig domains [Spodoptera frugiperda] |
| 14515 | 2 | 0 | 34 | 0 | 36 | 8.7 | 0.0 | gi|148298818|ref|NP_001091784.1| multi-binding protein [Bombyx mori] |
| 14700 | 0 | 0 | 183 | 2 | 185 | 93.3 | 2.4 | gi|260765453|gb|ACX49764.1| peptidoglycan recognition protein 2 [Manduca sexta] |
| 14752 | 0 | 0 | 118 | 2 | 120 | 60.2 | 2.4 | gi|260765453|gb|ACX49764.1| peptidoglycan recognition protein 2 [Manduca sexta] |
| 15639 | 10 | 0 | 109 | 0 | 119 | 5.6 | 0.0 | gi|148298818|ref|NP_001091784.1| multi-binding protein [Bombyx mori] |
| 15857 | 0 | 1 | 0 | 9 | 10 | 0.0 | 10.7 | gi|27733411|gb|AAO21503.1|AF413062_1 leureptin, LPS-binding [Manduca sexta] |
*
RA and ARN are calculated using original read numbers as described in Section 2.3. Listed here are contigs with RAIF/CF >5, RAIH/CH >8, ARNIF >10 when RNCF =0, or ARNIH >10 when RNCH =0. RAIF/CF and RAIH/CH values are shown in red if they are greater than 5 and 8, respectively. ARNIF and ARNIH values are shown in blue if they are higher than 10. In the columns of RA or ARN, cells shaded yellow and blue represent fat body- and hemocyte-specific gene expression, respectively. The complete list of 528 UP CIFH contigs is in Table S1.