Table 3.
A list of 40 UP CIFH contigs with similarity to extracellular signal modulators*
| CIFH contig # | Original read # | RA or ARN | BLAST results | |||||
|---|---|---|---|---|---|---|---|---|
| CF | CH | IF | IH | Total | IF/CF | IH/CH | ||
| 00915 | 0 | 21 | 21 | 26 | 68 | 10.7 | 1.5 | gi|91084647|ref|XP_966816.1| AGAP002414-PA, Zn protease [Tribolium castaneum] |
| 00940 | 0 | 0 | 209 | 7 | 216 | 106.6 | 8.3 | gi|1352212|sp|P48861.1|DDC_MANSE dopa decarboxylase DDC |
| 02023 | 1 | 0 | 33 | 7 | 41 | 16.8 | 8.3 | gi|148611442|gb|ABQ95973.1| tyrosine hydroxylase isoform A [Manduca sexta] |
| 01667 | 0 | 7 | 98 | 33 | 138 | 50.0 | 5.6 | gi|26006435|gb|AAL76085.1| proPO-activating proteinase-2 [Manduca sexta] |
| 01818 | 0 | 26 | 45 | 66 | 137 | 22.9 | 3.0 | gi|60299972|gb|AAX18637.1| proPO-activating proteinase-3 [Manduca sexta] |
| 02361 | 7 | 4 | 70 | 1 | 82 | 5.1 | 0.3 | gi|56418425|gb|AAV91020.1| hemolymph proteinase 22 [Manduca sexta] |
| 02382 | 0 | 2 | 109 | 69 | 180 | 55.6 | 41.0 | gi|4090964|gb|AAD09279.1| immune-related Hdd1 [Hyphantria cunea] |
| 02693 | 21 | 7 | 310 | 19 | 357 | 7.5 | 3.2 | gi|27733415|gb|AAO21505.1|AF413064_1 serpin 3a [Manduca sexta] |
| 02813 | 108 | 9 | 313 | 72 | 502 | 1.5 | 9.5 | gi|242351233|gb|ACS92763.1| serine proteinase-like protein 1b [Manduca sexta] |
| 02985 | 3 | 0 | 158 | 0 | 161 | 26.9 | 0.0 | gi|56418466|gb|AAV91027.1| serine proteinase-like protein 4 [Manduca sexta] |
| 03018 | 0 | 54 | 22 | 79 | 155 | 11.2 | 1.7 | gi|56418395|gb|AAV91005.1| hemolymph proteinase 7 [Manduca sexta] |
| 03778 | 0 | 11 | 192 | 28 | 231 | 97.9 | 3.0 | gi|74813957|sp|Q86RS3.1|DFP_MANSE immune-related Hdd11, precursor |
| 03989 | 0 | 1 | 8 | 24 | 33 | 4.1 | 28.5 | gi|56418399|gb|AAV91007.1| hemolymph proteinase 9 [Manduca sexta] |
| 05186 | 0 | 0 | 8 | 13 | 21 | 4.1 | 15.4 | gi|56418413|gb|AAV91014.1| hemolymph proteinase 17 [Manduca sexta] |
| 05606 | 1 | 0 | 19 | 4 | 24 | 9.7 | 4.7 | gi|4090968|gb|AAD09281.1| immune-related Hdd13 [Hyphantria cunea] |
| 05831 | 3 | 8 | 97 | 25 | 133 | 16.5 | 3.7 | gi|45594232|gb|AAS68507.1| serpin-5A [Manduca sexta] |
| 06149 | 21 | 22 | 686 | 32 | 761 | 16.7 | 1.7 | gi|27733421|gb|AAO21508.1|AF413067_1 serine protease-like protein [Manduca sexta] |
| 06215 | 29 | 1 | 108 | 8 | 146 | 1.9 | 9.5 | gi|112983872|ref|NP_001036857.1| serpin-like protein (SEP-LP) or serpin-12 [Bombyx mori] |
| 06581 | 0 | 0 | 13 | 10 | 23 | 6.6 | 11.9 | gi|4090970|gb|AAD09282.1| immune-related Hdd23 [Hyphantria cunea] |
| 07639 | 651 | 0 | 1237 | 14 | 1902 | 1.0 | 16.6 | gi|134436|sp|P14754.1|SERA_MANSE serpin-1 |
| 08231 | 0 | 1 | 0 | 34 | 35 | 0.0 | 40.4 | gi|56418417|gb|AAV91016.1| hemolymph proteinase 18 [Manduca sexta] |
| 10791 | 1 | 0 | 1081 | 1 | 1083 | 551.2 | 1.2 | gi|4262357|gb|AAD14591.1| scolexin A [Manduca sexta] |
| 10792 | 0 | 0 | 333 | 0 | 333 | 169.8 | 0.0 | gi|4262357|gb|AAD14591.1| scolexin A [Manduca sexta] |
| 13453 | 5 | 4 | 58 | 7 | 74 | 5.9 | 2.1 | gi|45594232|gb|AAS68507.1| serpin-5 [Manduca sexta] |
| 13454 | 0 | 1 | 17 | 10 | 28 | 8.7 | 11.9 | gi|45594232|gb|AAS68507.1| serpin-5 [Manduca sexta] |
| 14093 | 1 | 0 | 14 | 0 | 15 | 7.1 | 0.0 | gi|56418419|gb|AAV91017.1| hemolymph proteinase 19 [Manduca sexta] |
| 14248 | 0 | 6 | 0 | 196 | 202 | 0.0 | 38.8 | gi|2149091|gb|AAB58491.1| serpin-2 [Manduca sexta] |
| 14393 | 2 | 4 | 132 | 11 | 149 | 33.7 | 3.3 | gi|27733421|gb|AAO21508.1|AF413067_1 serine protease-like protein [Manduca sexta] |
| 14456 | 0 | 0 | 1 | 52 | 53 | 0.5 | 61.7 | gi|2149091|gb|AAB58491.1| serpin-2 [Manduca sexta] |
| 15055 | 1 | 1 | 16 | 0 | 18 | 8.2 | 0.0 | gi|112983896|ref|NP_001037394.1| paralytic peptide binding protein 1 [Bombyx mori] |
| 15111 | 1 | 48 | 8 | 800 | 857 | 4.1 | 19.8 | gi|2149091|gb|AAB58491.1| serpin-2 [Manduca sexta] |
| 16520 | 1 | 0 | 664 | 1 | 666 | 338.6 | 1.2 | gi|4262357|gb|AAD14591.1| scolexin A [Manduca sexta] |
| 16917 | 0 | 40 | 2 | 519 | 561 | 1.0 | 15.4 | gi|2149091|gb|AAB58491.1| serpin-2 [Manduca sexta] |
| 17048 | 0 | 1 | 0 | 95 | 96 | 0.0 | 112.8 | gi|2149091|gb|AAB58491.1| serpin-2 [Manduca sexta] |
| 17058 | 0 | 32 | 4 | 545 | 581 | 2.0 | 20.2 | gi|2149091|gb|AAB58491.1| serpin-2 [Manduca sexta] |
| 17751 | 0 | 24 | 1 | 269 | 294 | 0.5 | 13.3 | gi|2149091|gb|AAB58491.1| serpin-2 [Manduca sexta] |
| 18441 | 0 | 1 | 0 | 65 | 66 | 0.0 | 77.2 | gi|2149091|gb|AAB58491.1| serpin-2 [Manduca sexta] |
| 18669 | 0 | 0 | 285 | 0 | 285 | 145.3 | 0.0 | gi|4262357|gb|AAD14591.1| scolexin A [Manduca sexta] |
| 18670 | 0 | 0 | 139 | 0 | 139 | 70.9 | 0.0 | gi|4262357|gb|AAD14591.1| scolexin A [Manduca sexta] |
| 18963 | 0 | 0 | 254 | 0 | 254 | 129.5 | 0.0 | gi|4262357|gb|AAD14591.1| scolexin A [Manduca sexta] |
*
RA and ARN are calculated using original read numbers as described in Section 2.3. Listed here are contigs with RAIF/CF >5, RAIH/CH >8, ARNIF >10 when RNCF =0, or ARNIH >10 when RNCH =0. RAIF/CF and RAIH/CH values are shown in red if they are greater than 5 and 8, respectively. ARNIF and ARNIH values are shown in blue if they are higher than 10. In the columns of RA or ARN, cells shaded yellow and blue represent fat body- and hemocyte-specific gene expression, respectively. The complete list of 528 UP CIFH contigs is in Table S1.