Table 4.
A list of 18 UP CIFH contigs with similarity to intracellular signal transducers*
| CIFH contig # | Original read # | RA or ARN | BLAST results | |||||
|---|---|---|---|---|---|---|---|---|
| CF | CH | IF | IH | Total | IF/CF | IH/CH | ||
| 00461 | 1 | 48 | 14 | 108 | 171 | 7.1 | 2.7 | gi|47217104|emb|CAG02605.1| unnamed protein product, integrin β6 precursor [Tetraodon nigroviridis] |
| 00537 | 1 | 32 | 10 | 32 | 75 | 5.1 | 1.2 | gi|270009406|gb|EFA05854.1| TcasGA2_TC008649 Tyr protein kinase [Tribolium castaneum] |
| 00671 | 1 | 12 | 10 | 46 | 69 | 5.1 | 4.6 | gi|189235637|ref|XP_967498.2| ral guanine nucleotide exchange factor [Tribolium castaneum] |
| 01020 | 42 | 4 | 63 | 27 | 136 | 0.8 | 8.0 | gi|91082721|ref|XP_972476.1| ~ eiger CG12919-PA, JNK [Tribolium castaneum] |
| 01044 | 9 | 70 | 163 | 105 | 347 | 9.2 | 1.8 | gi|289629214|ref|NP_001166191.1| cactus [Bombyx mori] |
| 01313 | 2 | 52 | 33 | 35 | 122 | 8.4 | 0.8 | gi|242009174|ref|XP_002425367.1| Ser-Thr protein kinase, plant-type [P. humanus corporis] |
| 01390 | 1 | 31 | 14 | 19 | 65 | 7.1 | 0.7 | gi|46403173|gb|AAS92609.1| vrille transcription factor [Antheraea pernyi] |
| 01970 | 1 | 16 | 12 | 29 | 58 | 6.1 | 2.2 | gi|157118595|ref|XP_001659169.1| guanine nucleotide exchange factor [Aedes aegypti] |
| 04802 | 2 | 42 | 25 | 66 | 135 | 6.4 | 1.9 | gi|157412326|ref|NP_001098704.1| Relish2 [Bombyx mori] |
| 05836 | 2 | 1 | 0 | 7 | 10 | 0.0 | 8.3 | gi|189235110|ref|XP_971078.2| receptor tyrosine phosphatase type r2a [Tribolium castaneum] |
| 06304 | 1 | 0 | 11 | 1 | 13 | 5.6 | 1.2 | gi|170038257|ref|XP_001846968.1| dipeptidyl peptidase 4, apoptosis, immunity [Culex quinquefasciatus] |
| 06868 | 0 | 1 | 1 | 11 | 13 | 0.5 | 13.1 | gi|193713771|ref|XP_001946690.1| ankyrin repeat domain 54 [Acyrthosiphon pisum] |
| 06893 | 0 | 1 | 1 | 20 | 22 | 0.5 | 23.7 | gi|126635756|gb|ABO21763.1| Toll receptor [Manduca sexta] |
| 11311 | 0 | 1 | 3 | 9 | 13 | 1.5 | 10.7 | gi|189237512|ref|XP_972880.2| protein phosphatase type 2c [Tribolium castaneum] |
| 11356 | 0 | 1 | 4 | 7 | 12 | 2.0 | 8.3 | gi|156551808|ref|XP_001603899.1| arf6 guanine nucleotide exchange factor [Nasonia vitripennis] |
| 13966 | 0 | 1 | 0 | 9 | 10 | 0.0 | 10.7 | gi|190570736|ref|YP_001975094.1| ankyrin repeat protein [Wolbachia of C. quinquefasciatus Pel] |
| 15532 | 1 | 19 | 12 | 9 | 41 | 6.1 | 0.6 | gi|157412326|ref|NP_001098704.1| Relish2 [Bombyx mori] |
| 18001 | 0 | 1 | 0 | 7 | 8 | 0.0 | 8.3 | gi|126635756|gb|ABO21763.1| Toll receptor [Manduca sexta] |
*
RA and ARN are calculated using original read numbers as described in Section 2.3. Listed here are contigs with RAIF/CF >5, RAIH/CH >8, ARNIF >10 when RNCF =0, or ARNIH >10 when RNCH =0. RAIF/CF and RAIH/CH values are shown in red if they are greater than 5 and 8, respectively. ARNIF and ARNIH values are shown in blue if they are higher than 10. In the columns of RA or ARN, cells shaded yellow and blue represent fat body- and hemocyte-specific gene expression, respectively. The complete list of 528 UP CIFH contigs is in Table S1.