. Author manuscript; available in PMC: 2012 Sep 1.

Published in final edited form as: Insect Biochem Mol Biol. 2011 May 27;41(9):733–746. doi: 10.1016/j.ibmb.2011.05.005

Table 5.

A list of 65 UP CIFH contigs with similarity to antimicrobial proteins^*

CIFH contig #	Original read #					RA or ARN		BLAST results
CIFH contig #	CF	CH	IF	IH	Total	IF/CF	IH/CH	BLAST results
02067	1	0	280	82	363	142.8	97.4	gi\|110649240\|emb\|CAL25129.1\| gloverin [Manduca sexta]
02145	0	15	20	95	130	10.2	7.5	gi\|157134051\|ref\|XP_001663123.1\| transferrin [Aedes aegypti]
03142	1	7	420	121	549	214.2	20.5	gi\|33860163\|sp\|P82176.2\|IMPI_GALME inducible metalloproteinase inhibitor IMPIα precursor
03674	1	0	5	21	27	2.5	24.9	gi\|110347837\|gb\|ABG72720.1\| protease inhibitor-like protein [Antherae amylitta]
03746	0	7	55	389	451	28.0	66.0	gi\|148298709\|ref\|NP_001091749.1\| possible antimicrobial peptide [Bombyx mori]
04175	0	7	40	45	92	20.4	7.6	gi\|114052803\|ref\|NP_001040277.1\| salivary Cys-rich peptide [Bombyx mori]
04903	0	0	279	6	285	142.3	7.1	gi\|187281722\|ref\|NP_001119732.1\| lebocin 3 precursor [Bombyx mori]
05197	0	0	20	1	21	10.2	1.2	gi\|115392217\|gb\|ABI96910.1\| brasiliensin precursor, thrombin inhibitor [Triatoma brasiliensis]
06782	0	0	102	17	119	52.0	20.2	gi\|67906420\|gb\|AAY82587.1\| attacin-1 [Manduca sexta]
07116	1	4	902	3	910	459.9	0.9	gi\|171262319\|gb\|ACB45566.1\| lebocin-like protein [Antheraea pernyi]
07203	2	3	312	22	339	79.5	8.7	gi\|67906420\|gb\|AAY82587.1\| attacin-1 [Manduca sexta]
08286	0	0	139	23	162	70.9	27.3	gi\|56462340\|gb\|AAV91453.1\| protease inhibitor 6 [Lonomia obliqua]
08421	4	2	28	99	133	3.6	58.8	gi\|7327646\|gb\|AAB31190.2\| lysozyme [Manduca sexta]
08902	0	0	164	14	178	83.6	16.6	gi\|67906420\|gb\|AAY82587.1\| attacin-1 [Manduca sexta]
09484	1	0	134	56	191	68.3	66.5	gi\|29469961\|gb\|AAO74637.1\| antimicrobial peptide moricin [Manduca sexta]
10234	0	1	249	7	257	127.0	8.3	gi\|169264911\|dbj\|BAG12297.1\| gallerimycin [Samia cynthia ricini]
10722	9	3	102	3	117	5.8	1.2	gi\|110347833\|gb\|ABG72718.1\| protease inhibitor-like protein [Antherae amylitta]
10853	0	0	113	1	114	57.6	1.2	gi\|171262319\|gb\|ACB45566.1\| lebocin-like protein [Antheraea pernyi]
11027	59	0	694	0	753	6.0	0.0	gi\|136206\|sp\|P22297.1\|TRF_MANSE transferrin precursor
11040	0	4	51	249	304	26.0	73.9	gi\|29469969\|gb\|AAO74640.1\| antimicrobial protein attacin 2 [Manduca sexta]
11711	0	7	85	1317	1409	43.3	223.4	gi\|29469969\|gb\|AAO74640.1\| antimicrobial protein attacin 2 [Manduca sexta]
12151	0	0	153	0	153	78.0	0.0	gi\|116084\|sp\|P14665.1\|CEC5_MANSE bactericidin B-5P, cecropin-like
13563	0	0	657	0	657	335.0	0.0	gi\|110347786\|gb\|ABG72695.1\| attacin-like protein [Antheraea mylitta]
13894	0	0	48	29	77	24.5	34.4	gi\|112984238\|ref\|NP_001037460.1\| cecropin B precursor [Bombyx mori]
13916	1	0	741	0	742	377.8	0.0	gi\|219958086\|gb\|ACL68097.1\| lebocin-related protein precursor [Manduca sexta]
13936	0	0	25	0	25	12.7	0.0	gi\|123725\|sp\|P26227.1\|HTIB_MANSE trypsin inhibitor B, BPTI-type
14343	0	0	186	7	193	94.8	8.3	gi\|67906420\|gb\|AAY82587.1\| attacin-1 [Manduca sexta]
14380	0	0	106	0	106	54.0	0.0	gi\|67906420\|gb\|AAY82587.1\| attacin-1 [Manduca sexta]
14568	0	0	2	68	70	1.0	80.7	gi\|148298709\|ref\|NP_001091749.1\| possible antimicrobial peptide [Bombyx mori]
14641	0	0	157	0	157	80.1	0.0	gi\|67906420\|gb\|AAY82587.1\| attacin-1 [Manduca sexta]
14937	13	0	164	0	177	6.4	0.0	gi\|136206\|sp\|P22297.1\|TRF_MANSE: transferrin precursor
14997	0	0	34	10	44	17.3	11.9	gi\|29469965\|gb\|AAO74638.1\| antimicrobial peptide cecropin 6 [Manduca sexta]
15041	0	0	36	0	36	18.4	0.0	gi\|116084\|sp\|P14665.1\|CEC5_MANSE bactericidin B-5P, cecropin-like
15159	0	0	0	15	15	0.0	17.8	gi\|15963410\|dbj\|BAB69462.1\| attacin [Samia cynthia ricini]
15732	0	1	253	43	297	129.0	51.1	gi\|67906420\|gb\|AAY82587.1\| attacin-1 [Manduca sexta]
15744	0	0	0	35	35	0.0	41.6	gi\|29469969\|gb\|AAO74640.1\| antimicrobial protein attacin 2 [Manduca sexta]
15931	40	37	1504	364	1945	19.2	11.7	gi\|7327646\|gb\|AAB31190.2\| lysozyme [Manduca sexta]
15953	1	0	43	6	50	21.9	7.1	gi\|67906420\|gb\|AAY82587.1\| attacin-1 [Manduca sexta]
15997	0	0	142	4	146	72.4	4.7	gi\|67906420\|gb\|AAY82587.1\| attacin-1 [Manduca sexta]
15998	0	0	1	10	11	0.5	11.9	gi\|73921456\|gb\|AAZ94260.1\| immune related protein X-tox [Spodoptera frugiperda]
16018	0	0	40	12	52	20.4	14.2	gi\|116833115\|gb\|ABK29470.1\| immune reactive putative protease inhibitor [Helicoverpa armigera]
16129	1	0	212	35	248	108.1	41.6	gi\|67906420\|gb\|AAY82587.1\| attacin-1 [Manduca sexta]
16133	47	57	1719	440	2263	18.6	9.2	gi\|233964\|gb\|AAB19535.1\| lysozyme
16150	0	1	145	3	149	73.9	3.6	gi\|67906420\|gb\|AAY82587.1\| attacin-1 [Manduca sexta]
16292	0	0	1	34	35	0.5	40.4	gi\|148298709\|ref\|NP_001091749.1\| possible antimicrobial peptide [Bombyx mori]
16576	0	0	0	18	18	0.0	21.4	gi\|74767320\|sp\|Q5MGE6.1\|DFP3_LONON defense protein 3 precursor, attacin E
16606	8	0	164	0	172	10.5	0.0	gi\|136206\|sp\|P22297.1\|TRF_MANSE transferrin precursor
17135	0	9	103	1157	1269	52.5	152.6	gi\|110649242\|emb\|CAL25130.1\| attacin II [Manduca sexta]
17184	0	11	76	449	536	38.8	48.5	gi\|73921456\|gb\|AAZ94260.1\| immune related protein, X-tox [Spodoptera frugiperda]
17206	3	0	136	0	139	23.1	0.0	gi\|136206\|sp\|P22297.1\|TRF_MANSE transferrin precursor
17301	1	0	272	0	273	138.7	0.0	gi\|219958086\|gb\|ACL68097.1\| lebocin-related protein precursor [Manduca sexta]
17304	0	1	412	13	426	210.1	15.4	gi\|67906420\|gb\|AAY82587.1\| attacin-1 [Manduca sexta]
17350	0	0	205	0	205	104.5	0.0	gi\|29469969\|gb\|AAO74640.1\| antimicrobial protein attacin 2 [Manduca sexta]
17434	1	0	314	0	315	160.1	0.0	gi\|219958086\|gb\|ACL68097.1\| lebocin-related protein precursor [Manduca sexta]
17439	0	0	98	31	129	50.0	36.8	gi\|110649236\|emb\|CAL25127.1\| moricin [Manduca sexta]
17632	0	0	83	6	89	42.3	7.1	gi\|67906420\|gb\|AAY82587.1\| attacin-1 [Manduca sexta]
17705	0	0	36	0	36	18.4	0.0	gi\|67906420\|gb\|AAY82587.1\| attacin-1 [Manduca sexta]
18150	0	0	0	18	18	0.0	21.4	gi\|148298709\|ref\|NP_001091749.1\| possible antimicrobial peptide [Bombyx mori]
18239	3	0	67	0	70	11.4	0.0	gi\|136206\|sp\|P22297.1\|TRF_MANSE transferrin precursor
18308	15	0	169	0	184	5.7	0.0	gi\|136206\|sp\|P22297.1\|TRF_MANSE transferrin precursor
18324	0	0	25	0	25	12.7	0.0	gi\|67906420\|gb\|AAY82587.1\| attacin-1 [Manduca sexta]
18699	0	1	26	114	141	13.3	135.4	gi\|148298709\|ref\|NP_001091749.1\| possible antimicrobial peptide [Bombyx mori]
18814	0	0	235	29	264	119.8	34.4	gi\|67906420\|gb\|AAY82587.1\| attacin-1 [Manduca sexta]
18819	0	5	59	405	469	30.1	96.2	gi\|73921456\|gb\|AAZ94260.1\| immunity-related protein X-tox [Spodoptera frugiperda]
18977	0	1	20	2	23	10.2	2.4	gi\|67906420\|gb\|AAY82587.1\| attacin-1 [Manduca sexta]

RA and ARN are calculated using original read numbers as described in Section 2.3. Listed here are contigs with RA_IF/CF >5, RA_IH/CH >8, ARN_IF >10 when RN_CF =0, or ARN_IH >10 when RN_CH =0. RA_IF/CF and RA_IH/CH values are shown in red if they are greater than 5 and 8, respectively. ARN_IF and ARN_IH values are shown in blue if they are higher than 10. In the columns of RA or ARN, cells shaded yellow and blue represent fat body- and hemocyte-specific gene expression, respectively. The complete list of 528 UP CIFH contigs is in Table S1.