Table 8.
A list of HC CIFH contigs with BLAST hits*
| CIFH contig # | Original read # | RA or ARN | BLAST results | |||||
|---|---|---|---|---|---|---|---|---|
| CF | CH | IF | IH | Total | CH/CF | IH/IF | ||
| 00010 | 29 | 464 | 3 | 286 | 782 | 3.3 | 46.0 | gi|242005387|ref|XP_002423550.1| cAMP-dependent protein kinase catalytic subunit [Pediculus humanus corporis] |
| 00015 etc. | 119 | 5073 | 20 | 4227 | 9439 | 8.8 | 102.0 | gi|6164595|gb|AAF04457.1|AF078161_1 lacunin [Manduca sexta] (00015, 02717, 15269) |
| 00028 | 13 | 958 | 4 | 754 | 1729 | 15.3 | 91.0 | gi|91081003|ref|XP_975140.1| odd Oz protein [Tribolium castaneum] |
| 00248 | 7 | 200 | 1 | 155 | 363 | 5.9 | 74.8 | gi|157113908|ref|XP_001657920.1| n-acetyllactosaminide β-1,3-NAG transferase [Aedes aegypti] |
| 00379 | 10 | 308 | 1 | 184 | 503 | 6.4 | 88.8 | gi|170037242|ref|XP_001846468.1| Leu-rich repeat-containing protein 1 [Culex quinquefasciatus] |
| 00541 | 14 | 567 | 7 | 760 | 1348 | 8.4 | 52.4 | gi|170029717|ref|XP_001842738.1| Leu-rich repeat-containing G-protein coupled receptor 4 [Culex quinquefasciatus] |
| 00569 | 4 | 182 | 1 | 176 | 363 | 9.4 | 85.0 | gi|283135216|ref|NP_001164363.1| homeobox protein prospero [Nasonia vitripennis] |
| 00623 | 12 | 527 | 1 | 443 | 983 | 9.1 | 213.8 | gi|157132531|ref|XP_001656056.1| odd Oz protein [Aedes aegypti] |
| 00752 | 0 | 38 | 1 | 164 | 203 | 7.9 | 79.2 | gi|194859640|ref|XP_001969420.1| GG23966 [Drosophila erecta] |
| 00802 | 3 | 203 | 3 | 253 | 462 | 14.0 | 40.7 | gi|260840271|ref|XP_002613791.1| hypothetical BRAFLDRAFT_85332 [Branchiostoma floridae] |
| 00839 | 3 | 340 | 1 | 226 | 570 | 23.5 | 109.1 | gi|242021897|ref|XP_002431379.1| conserved hypothetical protein [Pediculus humanus corporis] |
| 00882 | 7 | 268 | 0 | 261 | 536 | 7.9 | 126.0 | gi|112983326|ref|NP_001037620.1| ras-related GTP-binding protein Rab3 [Bombyx mori] |
| 01064 | 5 | 134 | 1 | 116 | 256 | 5.6 | 56.0 | gi|48095930|ref|XP_394560.1| Jagged-1 precursor (Jagged1, hJ1, CD339 antigen) [Apis mellifera] |
| 01429 & | 27 | 924 | 4 | 827 | 1782 | 7.1 | 99.8 | gi|157134123|ref|XP_001663157.1| atlastin [Aedes aegypti] (01429, 03654) |
| 01609 | 1 | 71 | 1 | 144 | 217 | 14.7 | 69.5 | gi|134001247|gb|ABO45233.1| reverse transcriptase [Ostrinia nubilalis] |
| 02159 | 3 | 101 | 1 | 144 | 249 | 7.0 | 69.5 | gi|114052056|ref|NP_001040346.1| septin [Bombyx mori] |
| 02473 | 10 | 255 | 2 | 382 | 649 | 5.3 | 92.2 | gi|281362668|ref|NP_651533.2| eater [Drosophila melanogaster] |
| 02852 | 23 | 1128 | 7 | 885 | 2043 | 10.2 | 61.0 | gi|66391199|ref|YP_239364.1| hypothetical protein [Microplitis demolitorbracovirus] |
| 03225 | 1 | 25 | 1 | 143 | 170 | 5.2 | 69.0 | gi|195445668|ref|XP_002070431.1| GK11035 [Drosophila willistoni] |
| 03246 & | 4 | 182 | 2 | 245 | 433 | 9.4 | 59.1 | gi|83583697|gb|ABC24708.1| G protein-coupled receptor [Spodoptera frugiperda] (03246, 06319) |
| 03287 | 7 | 493 | 0 | 237 | 737 | 14.6 | 114.4 | gi|114052174|ref|NP_001040228.1| aminoacylase [Bombyx mori] |
| 04085 | 0 | 34 | 3 | 268 | 305 | 7.0 | 43.1 | gi|206725499|ref|NP_001128673.1| cathepsin L like protein [Bombyx mori] |
| 04278 | 3 | 141 | 1 | 154 | 299 | 9.7 | 74.3 | gi|270001550|gb|EEZ97997.1| hypothetical TcasGA2_TC000395 [Tribolium castaneum] |
| 04746 etc. | 0 | 0 | 16 | 1939 | 1955 | 0.0 | 58.5 | gi|195486646|ref|XP_002091593.1| GE13745 [Drosophila yakuba] (04746, 13353, 14100) |
| 05560 | 24 | 965 | 4 | 440 | 1433 | 8.3 | 53.1 | gi|254746344|emb|CAX16637.1| putative C1A Cys protease precursor [Manduca sexta] |
| 05577 | 4 | 157 | 22 | 1895 | 2078 | 8.1 | 41.6 | gi|254746342|emb|CAX16636.1| putative C1A Cys protease precursor [Manduca sexta] |
| 05933 etc. | 39 | 1862 | 8 | 1395 | 3304 | 9.9 | 84.2 | gi|82880638|gb|ABB92836.1| SRC-like protein [Spodoptera frugiperda] (05933, 08686, 13271, 15116, 15350, 15564) |
| 06497 etc. | 237 | 11297 | 15 | 4531 | 16080 | 9.9 | 145.8 | gi|217262|dbj|BAA03124.1| lectin [Bombyx mori] (06497, 15047, 15764, 15986, 16677, 16801, 16877, 16886, 17700) |
| 07139 | 21 | 767 | 2 | 262 | 1052 | 7.6 | 63.2 | gi|110649216|emb|CAL25117.1| dVA-AP3 [Manduca sexta] |
| 07199 | 2 | 73 | 1 | 102 | 178 | 7.6 | 49.2 | gi|110649250|emb|CAL25134.1| immulectin III [Manduca sexta] |
| 07480 | 3 | 248 | 2 | 193 | 446 | 17.1 | 46.6 | gi|91086517|ref|XP_971701.1| NtR CG6698-PA [Tribolium castaneum] |
| 07642 etc. | 17 | 1246 | 3 | 562 | 1828 | 15.2 | 90.4 | gi|55139125|gb|AAV41236.1| immulectin-3 [Manduca sexta] (07642, 13452, 14991) |
| 07883 | 0 | 0 | 3 | 792 | 795 | 0.0 | 127.4 | gi|157128533|ref|XP_001661472.1| hypothetical protein AaeL_AAEL011180 [Aedes aegypti] |
| 08524 etc. | 74 | 3481 | 7 | 1984 | 5546 | 9.8 | 136.8 | gi|2738863|gb|AAB94557.1| hemocyte protease-1 [Manduca sexta] (08524, 12527, 16288, 16719, 17102) |
| 10124 etc. | 162 | 6970 | 18 | 4204 | 11354 | 8.9 | 112.7 | gi|114050871|ref|NP_001040411.1| carboxylesterase [Bombyx mori] (10124, 15112, 16627, 16922, 17330, 18860) |
| 11280 etc. | 143 | 7866 | 11 | 2589 | 10609 | 11.4 | 113.6 | gi|91090548|ref|XP_971239.1| hemolectin CG7002-PA [Tribolium castaneum] (11280, 15506, 15594, 18551) |
| 13813 | 31 | 2398 | 4 | 848 | 3281 | 16.0 | 102.3 | gi|110758905|ref|XP_395067.3| ~ hemolectin CG7002-PA [Apis mellifera] |
| 13842 | 14 | 677 | 2 | 228 | 921 | 10.0 | 55.0 | gi|138601|sp|P19616.1|VITM_MANSE microvitellogenin precursor |
| 14248 etc. | 1 | 150 | 15 | 2329 | 2495 | 31.1 | 74.9 | gi|2149091|gb|AAB58491.1| serpin-2 [Manduca sexta] (14248, 15111, 16917, 17058, 17751) |
| 14570 etc. | 562 | 29402 | 26 | 11144 | 41134 | 10.8 | 206.9 | gi|162462371|ref|NP_001104817.1| lectin [B. mori] (14570, 15250, 15380, 15792, 16278, 16289, 16291, 16594, 16842, 17159, 17421, 17471, 17732, 17769, 18032, 18067, 18073, 18089, 18097, 18286, 18326, 18719, 18721, 18794) |
| 14760 & | 57 | 3372 | 3 | 1184 | 4616 | 12.3 | 190.5 | gi|156545430|ref|XP_001606650.1| ~ CG7002-PA [Nasonia vitripennis] (14760, 18045) |
| 14811 | 5 | 136 | 1 | 121 | 263 | 5.6 | 58.4 | gi|221055473|ref|XP_002258875.1| hypothetical protein, conserved in Plasmodium [Plasmodium knowlesi] |
| 15584 | 3 | 241 | 1 | 202 | 447 | 16.7 | 97.5 | gi|66535330|ref|XP_623280.1| atlastin CG6668-PA, isoformA [Apis mellifera] |
| 16815 etc. | 208 | 9161 | 39 | 6243 | 15651 | 9.1 | 77.3 | gi|75038472|sp|Q25519.3|PRP2_MANSE proPO-2 (16815, 17417, 17958, 18004, 18516, 18811) |
| 17085 etc. | 261 | 12058 | 33 | 8286 | 20638 | 9.6 | 121.2 | gi|74763772|sp|O44249.3|PRP1_MANSE proPO-1 (17085, 17315, 17420, 17612, 17629, 17562, 18065, 18463, 18887) |
*
RA and ARN are calculated using original read numbers as described in Section 2.3. Listed here are contigs with RAIH/IF >40, RACH/CF >40, ARNIH >80 when RNIF =0, or ARNCH >80 when RNCF =0. RAIH/IF and RACH/CF values are shown in red if they are greater than 40, whereas ARNIH and ARNCH values are shown in blue if they are higher than 80. In the columns of RA or ARN, cells shaded green and orange represent down- and up-regulated gene expression, respectively. Contigs with identical BLAST results are combined, with their average RAs or ARNs calculated based on the sums of original reads in CF, CH, IF, and IH for each group. Contigs with no BLAST hit can be found in Table S3, a complete list of 161 HC CIFH contigs.