Table 1.
Performance of the Gene Predictors on 1783 Genes
| CG | MG | CE | ME | WE | SN | |
|---|---|---|---|---|---|---|
| SC | 1179 (66%) | 31 (2%) | 6625 (88%) | 311 (4%) | 27 | 97% |
| SC-g | 1114 (63%) | 12 (1%) | 6580 (88%) | 220 (3%) | 71 | 98% |
| LC2 | 1078 (61%) | 19 (1%) | 6468 (86%) | 298 (4%) | 44 | 98% |
| LC1 | 967 (54%) | 21 (1%) | 6323 (84%) | 300 (4%) | 57 | 97% |
| GM | 799 (45%) | 31 (2%) | 5947 (79%) | 363 (5%) | 95 | 96% |
| GS | 650 (37%) | 43 (2%) | 5680 (75%) | 722 (10%) | 41 | 92% |
| GA | 557 (31%) | 39 (2%) | 4610 (61%) | 1183 (16%) | 415 | 85% |
SC indicates Statistical Combiner; SC-g, SC combining gene prediction programs only; LC2, Linear Combiner using sequence alignments; LC1, Linear Combiner using gene prediction programs only; GA, GlimmerM; GM, GeneMark.hmm; and GS, Genscan+. The columns are number of whole genes correctly predicted (CG), number of genes completely missed (MG), correctly predicted exons out of the 7510 total (CE), number of exons completely missed (ME), predicted exons overlapping a gene region but do not overlap a true exon (WE), and percentage of protein coding nucleotides correctly detected (SN).