Table 5.
The Set of Labels That Describe Each Sequence Interval and Are Used to Construct Gene Models on the Positive Strand
| Interval labels | Acceptor (a) | Start (r) | Coding (c) | Donor (d) | Stop (t) |
|---|---|---|---|---|---|
| Noncoding (nc) | 0 | 0 | 0 | 0 | 0 |
| Beginning internal (bn) | 1 | 0 | 1 | 0 | 0 |
| Complete internal (cn) | 1 | 0 | 1 | 1 | 0 |
| Complete terminal (ct) | 1 | 0 | 1 | 0 | 1 |
| Partial initial (bi) | 0 | 1 | 1 | 0 | 0 |
| Complete initial (ci) | 0 | 1 | 1 | 1 | 0 |
| Complete single (cs) | 0 | 1 | 1 | 0 | 1 |
| Coding (c) | 0 | 0 | 1 | 0 | 0 |
| Partial terminal (pt) | 0 | 0 | 1 | 0 | 1 |
| Ending internal (en) | 0 | 0 | 1 | 1 | 0 |
Labels reflect partial and complete exons. Each entry asserts whether the condition in that column must be true (1) or false (0). Each of the underlying conditions (acceptor, start, coding, donor, stop) define the type of coding interval and are represented by independent evidence sources.