Table 1.

Data Sets in EnsMart An `(F)' Indicates Focus Data Set

Species	Category	Data set	Primary source
Homo sapiens	Genomic	Ensembl genes (F)	Ensembl
		EST genes (F)	Ensembl
		Vega genes (F)	VEGA
		SNP (F)	dbSNP/HGVbase
		Markers	UCSC
	Disease	OMIM morbid map	OMIM
	Expression	eVOC	SANBI
		GNF	Novartis
		EST	dbEST
	Protein annotation	InterPro	Ensembl
		Pfam	Ensembl
		Prosite	Ensembl
		PRINTS	Ensembl
		PROFILE	Ensembl
		FAMILY clusters	Ensembl
Mus musculus	Genomic	Ensembl genes (F)	Ensembl
		EST genes (F)	Ensembl
		SNP (F)	dbSNP
		Markers	MGI
	Protein annotation	As for Homo sapiens	Ensembl
Rattus norvegicus	Genomic	Ensembl genes (F)	Ensembl
		EST genes (F)	Ensembl
		SNP (F)	MDC
		Markers	RMR/WTCHG
	Disease	QTL	RGD
	Protein annotation	As for Homo sapiens	Ensembl
Caenorhabditis elegans	Genomic	WormBase Genes (F)	AceDB
	Protein annotation	As for Homo sapiens	Ensembl
Caenorhabditis briggsae	Genomic	Ensembl genes (F)	Ensembl
	Protein annotation	As for Homo sapiens	Ensembl
Danio rerio	Genomic	Ensembl genes (F)	Ensembl
		Markers	EMBL STS
	Protein annotation	As for Homo sapiens	Ensembl
Fugu rubripes	Genomic	Ensembl genes (F)	IMCB
	Protein annotation	As for Homo sapiens	Ensembl
Anopheles gambiae	Genomic	Ensembl genes (F)	Ensembl
		SNP (F)	Ensembl
		Markers	Anobase
	Protein annotation	As for Homo sapiens	Ensembl
Drosophila melanogaster	Genomic	FlyBase genes (F)	FlyBase
	Protein annotation	As for Homo sapiens	Ensembl