Table 2.
Conservation of TFBSs from the Reference Set Among Different Organisms Identified by Different Approaches
| Site | Human | Mouse | Rat | Fugu | Zebrafish |
|---|---|---|---|---|---|
| R11477 | Ref | ALC | ALC | --C | ALC |
| R08296 | Ref | --C | --- | n/a | --- |
| R08092 | Ref | --C | --- | --- | --- |
| R10227 | Ref | A-C | ALC | --- | n/a |
| R11626 | Ref | -LC | ALC | --- | --C |
| R08293 | Ref | -L- | --C | n/a | --C |
| R03187 | Ref | ALC | -LC | n/a | n/a |
| R13001 | Ref | -LC | --- | n/a | n/a |
| R13048 | Ref | --C | --- | --- | --- |
| R11015 | ALC | Ref | ALC | --- | --C |
| R08112 | ALC | ALC | Ref | --- | --C |
| R08512 | ALC | ALC | Ref | --C | -LC |
Analysis parameters: 75% PWM threshold, 50% homology threshold, 5-bp flank length. (Ref) the site is a reference in the given organism, that is, known to be functional; (A) found by AVID; (L) found by LAGAN; (C) found by CONREAL; (-) not found; (n/a) the reference gene does not have an annotated ortholog in a given organism. The complete and detailed dataset is available as Supplemental Table S3.