Table 3.

Comparison of the discordant calls between McSNP and sequencing.

	McSNP	Sequencing	X	P(allele 1)	P(allele 2)	P(allele 3)
SNP5	allele 3 (CC)	allele 2 (CG)	0.73	0	0.19	0.81
SNP6	allele 3 (AA)	allele 2 (AG)	0.71	0	0.40	0.60
SNP6	allele 3 (AA)	allele 2 (AG)	0.72	0	0.28	0.72
SNP6	allele 3 (AA)	allele 2 (AG)	0.71	0	0.40	0.60
SNP6	No call	allele 2 (AG)	0.70	0	0.52	0.48
SNP6	allele 3 (AA)	allele 2 (AG)	0.71	0	0.40	0.60
SNP7	No call	allele 2 (GT)	0.70	0	0.52	0.48

Base calls, allele signals (X) and their corresponding allele probabilities are presented.