Table 1. Variation in the 150- and 430-loops of N1 and N2 NA alleles of avian, swine and human influenza viruses.
Host | N1 and N2 alleles | N |
150-loop |
430-loop |
||||
---|---|---|---|---|---|---|---|---|
147 | 149 | 150 | 430 | 431 | 432 | |||
Swine N1 | N1 swine H1N1 classic lineage consensus | 158 | G | V | K | Q | P | K |
N1 swine H1N1 Eurasian lineage consensus | 165 | G | I/V | K | R | P | K | |
Human N1 | N1 human H1N1 2009 pandemic consensus and A/California/04/2009 | 1,806 | G | I | K | R | P | K |
N1 human H1N1 seasonal 2007–2009 consensus | 1,809 | G | V | K | L | P | R | |
N1 human H1N1 seasonal 1950–2007 consensus | G | V | K | R | P | R | ||
N1 human H1N1 seasonal 1930–40s consensus | G | V | K | R | P | K | ||
N1 human H1N1 1918 pandemic | G | V | K | Q | P | K | ||
Avian N1 | N1 avian consensus and A/Vietnam/1203/2004 | 2,141 | G | V | K | R | P | K |
Human N2 | N2 human H3N2 seasonal mid-2000s-present consensus | 1,727 | N/D | V | R | R | K | E |
N2 human H3N2 seasonal 1990-mid 2000s consensus | D | V | H | R | K | Q/E | ||
N2 human H3N2 seasonal 1970–80s consensus | D | I | H | R | E | Q | ||
N2 human H3N2 1968 pandemic (NA of human H2N2 origin) | D | I | H | R | K | Q | ||
N2 human H2N2 seasonal A/Tokyo/3/1967 (atypical 149V) | D | V | H | R | K | Q | ||
N2 human H2N2 seasonal 1960s consensus | 88 | D | I | H | R | Q/K | Q | |
N2 human H2N2 1957 pandemic (NA of avian origin) | G | I | H | R | P | Q | ||
Avian N2 | N2 avian polymorphisms seen since the mid-1990s | 1,743 | G | T/A/S | H | R | P | K/Q |
|
N2 avian consensus |
|
G |
I |
H |
R |
P |
Q |
Consensus sequences contain amino acids at a frequency of at least 80%. Sequences in bold font correspond to structures simulated in this paper. Table entries are single-letter amino acid codes.