Table 1.
MADS-Box Genes Identified in Orchids
| Locus | Species | Clade | Class | Genbank Accession Number |
|---|---|---|---|---|
| DthyrFL1 | Dendrobium thyrsiflorum | AP1/SQUA -like | A | AY927236 |
| DthyrFL2 | Dendrobium thyrsiflorum | AP1/SQUA -like | A | AY927237 |
| DthyrFL3 | Dendrobium thyrsiflorum | AP1/SQUA -like | A | AY927238 |
| DOMADS2 | Dendrobium Madame Thong-In | AP1/SQUA-like | A | AF198175 |
| OMADS10 | Oncidium Gower Ramsey | AP1/SQUA-like | A | HM140846 |
| ORAP11 | Phalaenopsisamabilis | AP1/SQUA-like | A | DQ104328 |
| ORAP13 | Phalaenopsisamabilis | AP1/SQUA-like | A | DQ104327 |
| MADS1 | Cymbidium hybrid cultivar. | AP3/DEF-like | B | DQ683575 |
| DcOAP3A | Dendrobium crumenatum | AP3/DEF-like | B | DQ119838 |
| DcOAP3B | Dendrobium crumenatum | AP3/DEF-like | B | DQ119839 |
| DMMADS4 | Dendrobium moniliforme | AP3/DEF-like | B | GU132995 |
| GogalDEF1 | Gongora galeata | AP3/DEF-like | B | FJ804097 |
| GogalDEF2 | Gongora galeata | AP3/DEF-like | B | FJ804098 |
| GogalDEF3 | Gongora galeata | AP3/DEF-like | B | FJ804099 |
| HrDEF | Habenaria radiata | AP3/DEF-like | B | AB232663 |
| OMADS3 | Oncidium Gower Ramsey | AP3/DEF-like | B | AY196350 |
| OMADS5 | Oncidium Gower Ramsey | AP3/DEF-like | B | HM140840 |
| OMADS9 | Oncidium Gower Ramsey | AP3/DEF-like | B | HM140841 |
| PeMADS2 | Phalaenopsis equestris | AP3/DEF-like | B | AY378149 |
| PeMADS3 | Phalaenopsis equestris | AP3/DEF-like | B | AY378150 |
| PeMADS4 | Phalaenopsis equestris | AP3/DEF-like | B | AY378147 |
| PeMADS5 | Phalaenopsis equestris | AP3/DEF-like | B | AY378148 |
| PhlonDEF2 | Phragmipedium longiflorum | AP3/DEF-like | B | FJ804106 |
| PhlonDEF1 | Phragmipedium longiflorum | AP3/DEF-like | B | FJ804105 |
| PhlonDEF3 | Phragmipedium longiflorum | AP3/DEF-like | B | FJ804107 |
| PhlonDEF4 | Phragmipedium longiflorum | AP3/DEF-like | B | FJ804108 |
| SpodoDEF2 | Spiranthes odorata | AP3/DEF-like | B | FJ804111 |
| SpodoDEF1 | Spiranthes odorata | AP3/DEF-like | B | FJ804110 |
| SpodoDEF3 | Spiranthes odorata | AP3/DEF-like | B | FJ804112 |
| VaplaDEF1 | Vanilla planifolia | AP3/DEF-like | B | FJ804115 |
| VaplaDEF3 | Vanilla planifolia | AP3/DEF-like | B | FJ804117 |
| VaplaDEF2 | Vanilla planifolia | AP3/DEF-like | B | FJ804116 |
| EpalPI | Epipactis palustris | PI/GLO-like | B | DQ005588 |
| GogalGLO1 | Gongora galeata | PI/GLO-like | B | FJ804100 |
| HrGLO1 | Habenaria radiata | PI/GLO-like | B | AB232665 |
| HrGLO2 | Habenaria radiata | PI/GLO-like | B | AB232664 |
| OMADS8 | Oncidium Gower Ramsey | PI/GLO-like | B | HM140842 |
| OrcPI | Orchis italica | PI/GLO-like | B | AB094985 |
| OrcPI2 | Orchis italica | PI/GLO-like | B | AB537504 |
| PeMADS6 | Phalaenopsis equestris | PI/GLO-like | B | AY678299 |
| PhlonGLO1 | Phragmipedium longiflorum | PI/GLO-like | B | FJ804109 |
| SpodoGLO1 | Spiranthes odorata | PI/GLO-like | B | FJ804114 |
| VaplaGLO1 | Vanilla planifolia | PI/GLO-like | B | FJ804118 |
| CeMADS1 | Cymbidium ensifolium | AG-like | C | GU123626 |
| CeMADS2 | Cymbidium ensifolium | AG-like | C | GU123627 |
| DcOAG1 | Dendrobium crumenatum | AG-like | C | DQ119840 |
| DthyrAG1 | Dendrobium thyrsiflorum | AG-like | C | DQ017702 |
| PhalAG1 | Phalaenopsis sp. | AG-like | C | AB232952 |
| DcOAG2 | Dendrobium crumenatum | STK-like | D | DQ119841 |
| DthyrAG2 | Dendrobium thyrsiflorum | STK-like | D | DQ017703 |
| PhalAG2 | Phalaenopsis sp. | STK-like | D | AB232953 |
| OMADS1 | Oncidium Gower Ramsey | AGL6-like | E | HM140843 |
| OMADS7 | Oncidium Gower Ramsey | AGL6-like | E | HM140845 |
| DcOSEP1 | Dendrobium crumenatum | SEP1/2/4-like | E | DQ119842 |
| DOMADS1 | Dendrobium Madame Thong-In | SEP1/2/4-like | E | AF198174 |
| OMADS11 | Oncidium Gower Ramsey | SEP1/2/4-like | E | HM140847 |
| DOMADS3 | Dendrobium Madame Thong-In | SEP3-like | E | AF198176 |
| OMADS6 | Oncidium Gower Ramsey | SEP3-like | E | HM140844 |