Table 3.
Association of markers with different internal inclusion traits in the confirmation study
| SNP ID/marker | Genomic position | Marker informative in | Association found in | Trait and p-values |
|---|---|---|---|---|
| rs14762832 | 31,855,282 | LB | LB | Score LB (p < 0.001) |
| rs16766794 | 31,955,874 | LB | ||
| rs16766752 | 32,044,210 | LB | ||
| rs13795687 | 32,122,845 | LB | ||
| rs16766685 | 32,276,606 | LB | ||
| rs16766334 | 33,022,548 | LB | score LB (p < 0.05) | |
| rs16766274 | 33,092,178 | LB | ||
| rs16766257 | 33,167,074 | LB | ||
| rs14761556 | 33,443,086 | LB | ||
| rs14761487 | 33,508,907 | LB | LB | scoreLB (p < 0.01) groupLB (p = 0.02) number of spotsLB (p < 0.05) |
| rs14761341 | 33,749,060 | LB, Hy | ||
| rs14761267 | 33,832,110 | LB, Hy | LB, Hy | numberLB (p < 0.02) size LB (p < 0.02) MSHy (p < 0.05) |
| rs14761196 | 33,996,581 | Hy | Hy | MSHy (p < 0.01) BLHy (p < 0.04) |
| MCW241 | 34,264,059 | LB,Hy | LB, Hy | MSHy (p < 0.001) BLHy (p < 0.001) scoreLB (p < 0.01) |
| s107245031 | 34,315,708 | LB | LB | groupLB (p < 0.001) number of spotsLB p < 0.01) sizeLB (p < 0.001) |
| rs147632252 | 34,275,496 | LB, Hy | ||
| miRNA-1556 | 34,315,890 | LB | LB | groupLB (p < 0.002) number of spotsLB (p < 0.002) sizeLB (p < 0.002) |
| rs16767662 | 34,996,069 | |||
| rs16110443 | 36,236,398 | |||
| rs14764985 | 36,533,455 | LB | LB | groupLB (p < 0.03) number of spotLB (p < 0.02) |
| rs16111109 | 36,959,973 | |||
| rs14766124 | 38,170,684 | LB | ||
| rs16132985 | 41,098,862 | LB | ||
Markers (their informativity and relative genomic positions) in each population can be found in the 3rd column (LB = Lohmann Brown, Hy = Hy-Line). The population and trait showing the association (corresponding p-values in parenthesis) are indicated in the 4th and 5th columns.
1 ZO-2 snupe
2 not mapped in WASHUC2, position based on Groenen et al. 2009 [24].