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. 2011 Jul 28;6(7):e21259. doi: 10.1371/journal.pone.0021259

Table 3. Comparison of varied bases of orthologous miRNAs in grapevine and Arabidopsis and binding sites of them.

MiRNA Varied base numbers in miRNA orthologs Binding sites of varied bases in target sequences Mismatch number between miRNA and its target Mismatch number < or  = 4?
At-miR156a 2 <$>\raster="rg1"<$>□ 1 Y
Vv-miR156a 2 Y
At-miR156e 1 1 Y
Vv-miR156e 2 Y
At-miR156f 3 ▵▴<$>\raster="rg1"<$> 1 Y
Vv-miR156f 1 Y
At-miR156g 4 ▵▴<$>\raster="rg1"<$>□ 2 Y
Vv-miR156g 1 Y
At-miR159a 3 ▵<$>\raster="rg1"<$>▪ 3 Y
Vv-miR159a 2 Y
At-miR159b 2 □▪▵ 3 Y
Vv-miR159b 4 Y
At-miR160a/b 1 1 Y
Vv-miR160a/b 2 Y
At-miR164b 2 □▴ 2 Y
Vv-miR164b 3 Y
At-miR164c 1 1 Y
Vv-miR164c 2 Y
At-miR167a 1 3 Y
Vv-miR167a 3 Y
At-miR167b 1 <$>\raster="rg1"<$> 0 Y
Vv-miR167b 1 Y
At-miR167c 3 □<$>\raster="rg1"<$> 1 Y
Vv-miR167c 1 Y
At-miR169a 1 3 Y
Vv-miR169a 4 Y
At-miR169b/h 3 □<$>\raster="rg1"<$> 4 Y
Vv-miR169b/h 6 N
At-miR169d 3 □<$>\raster="rg1"<$> 4 Y
Vv-miR169d 4 Y
At-miR169e 5 <$>\raster="rg1"<$>▪ 0 Y
Vv-miR169e 4 Y
At-miR169f,g 3 □<$>\raster="rg1"<$> 4 Y
Vv-miR169f,g 3 Y
At-miR169j/k/m 2 4 Y
Vv-miR169j/k/m 4 Y
At-miR169i 5 <$>\raster="rg1"<$>□▴ 4 Y
Vv-miR169i 6 N
At-miR169l 5 □<$>\raster="rg1"<$> 2 Y
Vv-miR169l 2 Y
At-miR169m 3 ▪<$>\raster="rg1"<$> 1 Y
Vv-miR169m 2 Y
At-miR169n 5 <$>\raster="rg1"<$>□ 2 Y
Vv-miR169n 3 Y
At-miR172c 1 2 Y
Vv-miR172c 1 Y
At-miR172d 1 2 Y
Vv-miR172d 3 Y
At-miR319b 2 <$>\raster="rg1"<$> 3 Y
Vv-miR319b 3 Y
At-miR319c 1 0 Y
Vv-miR319c 0 Y
At-miR393a/b 1 <$>\raster="rg1"<$> 3 Y
Vv-miR393a/b 4 Y
At-miR395b/c/f 1 3 Y
Vv-miR395b/c/f 4 Y
At-miR396a/b 3 <$>\raster="rg1"<$> 2 Y
Vv-miR396a/b 0 Y
At-miR397a 2 <$>\raster="rg1"<$> 0 Y
Vv-miR397a 0 Y
At-miR397b 3 <$>\raster="rg1"<$>▵ 1 Y
Vv-miR397b 0 Y
At-miR403 2 <$>\raster="rg1"<$> 2 Y
Vv-miR403 0 Y
At-miR827 2 <$>\raster="rg1"<$>▵ 2 Y
Vv-miR827 0 Y
At-miR828a 1 2 Y
Vv-miR828a 1 Y

Notes: At: Arabidopsis; Vv: grapevine; Y: Yes; N: No; <$>\raster="rg1"<$>: more or less 1–4 terminal bases of Vv-miRNAs compared to those in Arabidopsis; □: variable terminal bases, being mismatched with the corresponding bases of target genes, on orthologous miRNAs both of grapevine and Arabidopsis; ▪: varied terminal bases of Vv-miRNAs changing to be mismatched with the corresponding bases of target genes that match to At-miRNAs; ▵: variable inner bases, being mismatched with the corresponding bases of target genes, of orthologous miRNAs ofgrapevine and Arabidopsis; ▴: varied inner bases of Vv-miRNAs changing to be mismatched with the corresponding bases of target genes that match to At-miRNAs.