Table 2. Summary of read mapping to Rd (KW20).
| Rd-RR | NP-NN | Nov1 | Nal1 | Pool | |
| % Matched a | 99.7% | 89.2% | 99.7% | 99.7% | 95.9% |
| Variant b | 277 | 39,049 | 1,441 | 1,530 | 262 |
| Ambiguous c | 4,459 | 10,353 | 4,411 | 3,675 | 74,374 |
| Unmapped d | 112 | 148,510 | 111 | 867 | 38 |
a
Percent of bases that unambiguously matched their mapped reference base. The Rd (KW20) reference is 1,830,138 bp.
b
Number of bases that unambiguously differed from their mapped reference base.
c
Number of bases whose identity at mapped positions was ambiguous, defined where either the SamTools consensus caller identified a non-ACGT base, or because the frequency of non-reference variants at that position was between 0.05 and 0.95.
d
Number of reference genome positions that were not mapped by the indicated set of sequence reads.