Table 1.
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MLST allele |
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Strains | gdh | gyd | pstS | gki | aroE | xpt | yqiL | ST | CC | Source | Year | Place | Province/city |
DQ195 | 12 | 7 | 3 | 7 | 6 | 1 | 5 | 6 | 2 | Endot. sec | 2003 | Hospital | Havana City |
DQ203 | 12 | 7 | 3 | 7 | 6 | 1 | 5 | 6 | 2 | Blood | 2003 | Hospital | Havana City |
DQ210 | 12 | 7 | 3 | 7 | 6 | 1 | 5 | 6 | 2 | Surgical wound | 2003 | Hospital | Santiago |
DQ132 | 10 | 1 | 11 | 6 | 5 | 1 | 4 | 64 | 8 | Catheter | 2001 | Hospital | Holguin |
DQ152 | 10 | 1 | 11 | 6 | 5 | 1 | 4 | 64 | 8 | Blood | 2001 | Hospital | Holguin |
DQ199 | 10 | 1 | 11 | 6 | 5 | 1 | 4 | 64 | 8 | Blood | 2003 | Hospital | Havana City |
DQ320 | 10 | 1 | 11 | 6 | 5 | 1 | 4 | 64 | 8 | Blood | 2005 | Hospital | Havana City |
DQ118 | 1 | 7 | 9 | 1 | 1 | 1 | 1 | 21 | 21 | Surgical wound | 2002 | Hospital | Santiago |
DQ120 | 1 | 7 | 9 | 1 | 1 | 1 | 1 | 21 | 21 | Catheter | 2002 | Hospital | Santiago |
DQ295 | 1 | 7 | 9 | 1 | 1 | 1 | 1 | 21 | 21 | Surgical wound | 2005 | Hospital | Holguin |
DQ256 | 5 | 1 | 1 | 3 | 7 | 7 | 6 | 16 | 58 | Vagina | 2004 | Community | Guantanamo |
DQ269 | 5 | 1 | 1 | 3 | 7 | 7 | 6 | 16 | 58 | CSF | 2004 | Hospital | Santiago |
DQ297 | 5 | 1 | 1 | 3 | 7 | 7 | 6 | 16 | 58 | Ammniotic fluid | 2005 | Hospital | Holguin |
DQ314 | 5 | 1 | 1 | 3 | 7 | 7 | 6 | 16 | 58 | Vagina | 2005 | Community | Holguin |
DQ138 | 14 | 2 | 18 | 10 | 16 | 2 | 12 | 59 | N | Perianal fistula | 2001 | Hospital | Holguin |
DQ213 | 3 | 6 | 23 | 12 | 9 | 10 | 7 | 40 | 40 | Blood | 2003 | Hospital | Havana City |
DQ165 | 27 | 2 | 16 | 28 | 26 | 2 | 1 | 81 | N | CSF | 2002 | Hospital | Holguin |
DQ243 | 2 | 3 | 13 | 11 | 3 | 2 | 2 | 23 | 25 | Peritoneal fluid | 2004 | Hospital | Holguin |
DQ190 | 1 | 1 | 11 | 1 | 21 | 1 | 2 | 115 | N | CSF | 2003 | Hospital | C. de Ávila |
DQ287 | 17 | 2 | 22 | 1 | 14 | 14 | 1 | 116 | 116 | Catheter | 2004 | Hospital | Havana City |
DQ298 | 1 | 1 | 9 | 6 | 1 | 1 | 1 | 117 | 21 | Blood | 2005 | Hospital | Havana City |
DQ261 | 15 | 2 | 33 | 16 | 17 | 15 | 35 | 118 | N | Vagina | 2004 | Community | Guantanamo |
DQ317 | 39 | 2 | 49 | 45 | 47 | 2 | 48 | 225 | N | Surgical wound | 2005 | Hospital | Havana City |
CC, clonal complex; N, not assigned; Endot. Sec., endotracheal secretion; CSF, cerebrospinal fluid.