Table A.
Model neurons currently available in GenNet.
| Cell type | Designator | Reference |
|---|---|---|
| Regular-spiking excitatory cell | 0 | Gloveli et al. (2005) |
| Generic inhibitory Cell | 1 | Gloveli et al. (2005) |
| Oriens–lacunosum moleculare interneuron | 2 | Saraga et al. (2003) |
| Passive membrane | 3 | |
| Izhikevich neuron (Tonic spiking) | 4 | Izhikevich (2004) |
| Izhikevich neuron (Class 1 excitable) | 5 | Izhikevich (2004) |
| Fast-spiking interneuron | 6 | Wang and Buzsáki (1996) |
| Oriens–lacunosum molecular interneuron | 7 | Saraga et al. (2003) with h-current from Acker et al. (2003) |
| Pyramidal neuron | 8 | Mainen and Sejnowski (1996) |
| Fast-spiking interneuron | 9 | Golomb et al. (2007) |
| Leaky integrate-and fire neuron 1 | 10 | Dayan and Abbott (2001) |
| Leaky integrate-and fire neuron 2 | 11 | Dayan and Abbott (2001) |
| Adaptive exponential integrate-and-fire | 12 | Brette and Gerstner (2005) |
Source code for all included cell models can be found with the main GenNet source code (http://www.rtxi.org/topics/modules/). These code examples can be used as templates to create custom cell models for use with GenNet. The Section “Example Model Source Code” in the Supplementary Materials includes a complete code listing of an example model cell.