Table 1. One-way ANOVA and Duncan grouping method to assess β-diversity at the levels of technical replicates, biological replicates and treatments based on the combined OTUs from both forward and reverse primers.
Data sizea |
With singletons |
Singletons removed |
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---|---|---|---|---|---|---|---|---|---|
Sørensen |
Bray-Curtis |
Sørensen |
Bray-Curtis |
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β-Diversityb | Significancec | β-Diversityb | Significancec | β-Diversityb | Significancec | β-Diversityb | Significancec | ||
Technical replicate | 42 | 0.756 | c | 0.763 | c | 0.734 | c | 0.475 | b |
Biological replicate | 322 | 0.814 | b | 0.866 | a | 0.798 | b | 0.533 | a |
Warming | 196 | 0.83 | a | 0.854 | b | 0.815 | a | 0.526 | a |
Clipping | 196 | 0.834 | a | 0.853 | b | 0.82 | a | 0.525 | a |
Abbreviation: ANOVA, analysis of variance.
Data sizes (n) are the number of data points of the pairwise comparisons within the technical replicates, biological replicates or treatments.
We calculate two popular β-diversity dissimilarity measurements, Sørensen and Bray-Curtis, in which Sørensen dissimilarity is based on OTUs richness and Bray-Curtis dissimilarity takes OTUs abundance into account.
Significance at [pr(>F)]<0.05, using Duncan grouping method is shown. a, b and c represent the significance of β-diversity differences between technical replicates, biological replicates and treatments. a marks the highest β-diversity, the one less than the highest but not significant is still marked with a, then the ones significantly lower than the highest is marked with b or c.