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. Author manuscript; available in PMC: 2012 Aug 15.
Published in final edited form as: DNA Repair (Amst). 2011 May 31;10(8):826–834. doi: 10.1016/j.dnarep.2011.04.032

Table 1.

Substrates

Substrate Sequencea
49-mer UV substrates
    25-mer primer 5’-AGCTATGACCATGATTACGAATTGC
    Undamaged template 3’-TCGATACTGGTACTAATGCTTAACGAATTAAGCACGTCCGTACCATCGA
    CPD templateb 3’-TCGATACTGGTACTAATGCTTAACGAATTAAGCACGTCCGTACCATCGA
    (6-4) PP templateb 3’-TCGATACTGGTACTAATGCTTAACGAATTAAGCACGTCCGTACCATCGA
45-mer UV substrates
    25-mer primer 5’-AATTTCTGCAGGTCGACTCCAAAGG
    Undamaged template 3’-TTAAAGACGTCCAGCTGAGGTTTCCGATTGGGCCATGGCTCGACC
    CPD templateb 3’-TTAAAGACGTCCAGCTGAGGTTTCCGATTGGGCCATGGCTCGACC
    (6-4) PP templateb 3’-TTAAAGACGTCCAGCTGAGGTTTCCGATTGGGCCATGGCTCGACC
45-mer AP substrates
    23-mer primer 5’-AATTTCTGCAGGTCGACTCCAAA
    Undamaged template 3’-TTAAAGACGTCCAGCTGAGGTTTCCGATTGGGCCATGGCTCGACC
    TAF templatec 3’-TTAAAGACGTCCAGCTGAGGTTTCCFATTGGGCCATGGCTCGACC
    TFG templatec 3’-TTAAAGACGTCCAGCTGAGGTTTCCGFTTGGGCCATGGCTCGACC
a

Positions of DNA lesions in each template are underlined.

b

Oligonucleotides containing CPDs and (6-4) photoproducts (PP) were synthesized as previously described [59,60].

c

TAF and TFG templates contain a single tetrahydrofuran (F), a stable mimic of an AP site.