. 2011 Jul 5;43(1):26. doi: 10.1186/1297-9686-43-26

Table 2.

Significance of differences in accuracies between all SNP models

Model	Scenario	r_g¹	Trait	G vs. BCπ0	G vs. BSSVS	BCπ0 vs. BSSVS
ST	1		1	***	***
	1	0.25	2
	1	0.54	2
	1	0.75	2

	2		1
	2	0.25	2
	2	0.54	2
	2	0.75	2

MT	1	0.25	1	***	***	***
	1	0.54	1	***	***	***
	1	0.75	1	***	***	***
	1	0.25	2	***	***	*
	1	0.54	2	***	***	*
	1	0.75	2	***	***	*

	2	0.25	1	***	***
	2	0.54	1	***	***	**
	2	0.75	1	***	***	**
	2	0.25	2	***	***
	2	0.54	2	***	***
	2	0.75	2	***	***

Comparisons are between ST and MT models for animals without any phenotypes (generation 3) between pairwise SNP-based models across scenarios, genetic correlations (r_g), and traits

¹Phenotypes for trait 1 were the same across genetic correlations, and therefore analyzed only once with each ST model; *** P-value < 0.001, ** P-value < 0.01, * P-value < 0.05