Table 2.
Summary statistics for windows representing extreme |iHS| and FST
| Chr | Position (Mbp) | |iHS| or FST1 | Breed2 | Gene/entry3 (n) | Candidate Gene | Gene name or function |
|---|---|---|---|---|---|---|
| 1 | 79-81.5 | 2.10 | HR | 6 | SST | Somatostatin |
| 2 | 34.5-36 | 2.26 | HR | 6 | GCG | Glucagon |
| FAP | Fibroblast activation protein, alpha | |||||
| 2 | 70-73 | 2.06 | MG/BE/SH/BR | 5 | - | - |
| 6 | 61.75-62.75 | 3.41 | BS | 13 | UGDH | UDP-glucose dehydrogenase |
| APBB2 | Amyloid beta (A4) precursor protein-binding, family B, member 2 (Fe65-like) | |||||
| 6 | 80-83 | HR | 9 | SRD5A2L2 | Lipid metabolism | |
| 7 | 39-41 | 1.90 | AA | 15 | COL23A1 | Collagen, type XXIII, alpha 1 |
| MGAT1 | Fertilization and early development of the embryos | |||||
| 10 | 29-31 | 2.24 | BE/SH | 8 | ACTC1 | Actinin, Involved in the formation of filaments |
| 12 | 36-38 | 2.03 | AA | 19 | ATP12A | ATPase activity |
| 13 | 30.5-31.5 | 2.68 | BS | 8 | TRDMT1 | Cysteine and methionine metabolism |
| 14 | 64-65 | 2.02 | AA | 6 | MATN2 | Developing cartilage rudiments |
| 16 | 19.75-20.25 | 2.60 | HS | 2 | SPATA17 | Spermatogenesis associated 17 |
| 16 | 39-40 | 1.98 | AA | 14 | NMNAT1 | Methylenetetrahydrofolate reductase (NADPH) activity |
| 17 | 31-32.5 | 2.05 | AA/HR | 15 | PGRMC2 | Progesterone receptor membrane component 2 |
| 18 | 57.25-57.75 | 2.20, 0.78 | HS | 30 | SIGLEC5,8,10 | Sialic acid binding Ig-like lectin 5, 8, 10 |
| 1 | 12-13 | 0.92 | - | 0 | - | |
| 2 | 111.5-112 | 0.98 | - | 11 | ABCB6 | ATP-binding cassette, sub-family B (MDR/TAP), member 6 |
| GLB1L | Galactosidase, beta 1-like | |||||
| 3 | 119.2-119.7 | 0.92 | - | 11 | SMCP | Sperm mitochondria-associated cysteine-rich protein |
| 7 | 53.25-53.75 | 0.74 | - | 4 | FGF1 | A growth factor which stimulates growth or differentiation, key role in embryonic development |
| 9 | 42-43 | 0.78 | - | 12 | LACE1 | Lactation elevated 1 |
| PPIL6 | Peptidylprolyl isomerase (cyclophilin)-like 6 | |||||
| 13 | 53.5-54 | 0.98 | - | 7 | SIRPA | Signal-regulatory protein |
| 16 | 4.75-5.25 | 098 | - | 5 | - | - |
| 17 | 39.5-40.5 | 0.98 | - | 4 | - | - |
| 18 | 58.25-58.75 | 0.98 | - | 15 | - | - |
| 20 | 15.25-15.75 | 0.92 | - | 8 | ADAMTS6 | - |
| 22 | 35.25-35.75 | 0.77 | - | 3 | - | - |
1 FST values are in italic
2 Breed name abbreviations are as follows: Australian Angus (AN), Belmond Red (BE), Brahman (BR), Brown Swiss (BS), Hereford (HR), Holstein (HS), Murray Gray (MG), Santa Gertrudis (SG), Shorthorns (SH)
3 Other kind of entries like mRNA, protein, etc submitted in NCBI.