Table A4.
Amplification primers used in MALDI-TOF MS genotyping.
| Name | Genomic position | Primer sequence (5′ → 3′) | Amplification product (bp) | SNP ID |
|---|---|---|---|---|
| PON3_1f | 3882–3982 | ACGTTGGATGTAAGCAATCTGTGCTGCAGG | 111 | rs11767787 |
| PON3_1r | ACGTTGGATGGCTGACACCTATGTTAACGC | |||
| PON3_2f | 4148–4256 | ACGTTGGATGTCGGTGGAACCTAACAGAAC | 119 | rs17885453 |
| PON3_2r | ACGTTGGATGACTGAAGATGCGGGAAGA | |||
| PON3_3f | 4256–4318 | ACGTTGGATGTTCCTCCCCCTCCAACCT | 73 | rs17882539 |
| PON3_3r | ACGTTGGATGTCCTGCCAGGCAAGAAATG | |||
| PON3_6f | 4496–4580 | ACGTTGGATGAAGGCAATCGAAGCGAAGAG | 95 | rs2072200 |
| PON3_6r | ACGTTGGATGAGGTAAGGCACGAAGGTCAG | |||
| PON3_7f | 4944–5039 | ACGTTGGATGATCCGTACGCGAGGCAGGAA | 106 | rs17886586 |
| PON3_7r | ACGTTGGATGACGAGCTTCCCCATGGTCTC | |||
| PON3_8f | 5058–5156 | ACGTTGGATGGGTCGGCCTGTCCTTAGTC | 109 | rs13226149 |
| PON3_8r | ACGTTGGATGCTCACTTGGAAGAGGAGAG | |||
| PON3_10f | 10322–10421 | ACGTTGGATGTTCCCACACACTTATTAGCC | 110 | rs10487132 |
| PON3_10r | ACGTTGGATGACAGGCTAAGAAGCAGTAGG | |||
| PON3_11_12f | 29232–29107 | ACGTTGGATGAATGAACAAAACCCAAGGGC | 136 | rs1053275, rs2375003 |
| PON3_11_12r | ACGTTGGATGCCCCTTATCCCTAAACATAC | |||
| PON3_13f | 32673–32769 | ACGTTGGATGGTGAGAGTACTTTTCTTCTCC | 107 | rs468 |
| PON3_13r | ACGTTGGATGGTCATCTCCCTTAATTATG | |||
| PON3_14f | 33844–33927 | ACGTTGGATGGATAGGGGTAACTTTCTTGG | 94 | rs17879114 |
| PON3_14r | ACGTTGGATGATGTGGGGATGATTCACAAC | |||
| PON3_15f | 33928–34038 | ACGTTGGATGCCGCACAATACTTTCATTCC | 121 | rs17878827 |
| PON3_15r | ACGTTGGATGGAAGTCCACTGTGGAGATAT | |||
| PON3_16f | 36189–36095 | ACGTTGGATGTCAGGCTCCTCTTTAGATCC | 105 | rs9640632 |
| PON3_16r | ACGTTGGATGCTCTGGGAAGTACATCAGAC | |||
| PON3_17f | 37280–37383 | ACGTTGGATGGGGAGTTGGTAAAATAGTGG | 114 | rs17883013 |
| PON3_17r | ACGTTGGATGTGGGTCTCTTTTTCCACCTC | |||
| PON3_18f | 37398–37496 | ACGTTGGATGGAGATGATCTTGGATCTTCG | 109 | rs17880470 |
| PON3_18r | ACGTTGGATGTGTGATCCCATTGGCACTAC | |||
| PON3_19f | 39847–39951 | ACGTTGGATGTTGTACTTTCTCAATGAGGC | 115 | rs2057682 |
| PON3_19r | ACGTTGGATGAAGGCTCAGCAGAGTAAAGG | |||
| PON3_20f | 40313–40426 | ACGTTGGATGGATACATAGGATTATTGGAG | 124 | rs7778771 |
| PON3_20r | ACGTTGGATGAAAGGGTGTCAGTAATTGTG | |||
| PON3_21f | 41395–41513 | ACGTTGGATGACTCACTGGTTGGTGTTTGC | 129 | rs17885558 |
| PON3_21r | ACGTTGGATGGAGCTCTAGACTCTAGATAG | |||
| PON3_W2_1f | 1–96 | ACGTTGGATGGCAGAAGACATTACTCAGAC | 106 | var1496 |
| PON3_W2_1r | ACGTTGGATGCCTAATCATCATTTTCAGGC | |||
| PON3_W2_3f | 594–688 | ACGTTGGATGCAGATTCTCCAAGCCTAGAC | 105 | var2115 |
| PON3_W2_3r | ACGTTGGATGATGTTTAGGTGGAGGGACTG | |||
| PON3_W2_4f | 877–965 | ACGTTGGATGTTGAATCTGGAGAGGAAGGC | 99 | var2375 |
| PON3_W2_4r | ACGTTGGATGTGTTACTTCCAGTGGCTTCC | |||
| PON3_W2_9f | 8318–8418 | ACGTTGGATGTTGTGCTAGCAGCTGGAAAG | 111 | var9827 |
| PON3_W2_9r | ACGTTGGATGTCCCTTCTCCAACAGAATCC | |||
| PON3_W2_13f | 11306–11405 | ACGTTGGATGTGGGCATTCCTGTGGTGTTC | 110 | var12788 |
| PON3_W2_13r | ACGTTGGATGTGGATCCCTATGCTCTCATC | |||
| PON3_W2_14f | 11833–11960 | ACGTTGGATGGTGTATTTATGAGATGTTG | 138 | rs1003504 |
| PON3_W2_14r | ACGTTGGATGTTCCAGCAATCAGAATTCAC | |||
| PON3_W2_15f | 26476–26564 | ACGTTGGATGGTATAGAGTGAGAAGGGAGG | 99 | rs978903 |
| PON3_W2_15r | ACGTTGGATGCCCAGATAGAAATCCTGCTC | |||
| PON3_W2_16f | 29001–29088 | ACGTTGGATGTGTATATGTGTGCACACTTG | 98 | Campo219 |
| PON3_W2_16r | ACGTTGGATGTTTTCCTGGTTCATCTGGCG | |||
| PON3_W2_17f | 29283–29404 | ACGTTGGATGCCACATAGGGCCAAAAATAC | 132 | rs2375002 |
| PON3_W2_17r | ACGTTGGATGAACAGGAAGAGAGAAGATGC | |||
| PON3_W2_18f | 33734–33863 | ACGTTGGATGTGGCATTTGTCTGACTTACC | 140 | Wang133 |
| PON3_W2_18r | ACGTTGGATGCCAAGAAAGTTACCCCTATC | |||
| PON3_W2_20f | 35612–35710 | ACGTTGGATGGAAGGATCCTTCCCTAGAAC | 109 | var37120 |
| PON3_W2_20r | ACGTTGGATGCCAGAAATGTATTGCCTCGC | |||
| PON3_W2_22f | 38481–38564 | ACGTTGGATGTTAGCTGCTACATCAGCTAC | 94 | Y233C |
| PON3_W2_22r | ACGTTGGATGGAGTGTTGTCTCTCATTACC | |||
| PON3_W2_23f | 38982–39093 | ACGTTGGATGTTCTTCCAAGTCACCCCAAC | 123 | var40512 |
| PON3_W2_23r | ACGTTGGATGAACTATAACCCTGAGGACCC | |||
| PON3_W2_25f | 41234–41349 | ACGTTGGATGTTTCTCGACAGGTACTTCGC | 126 | S311T |
| PON3_W2_25r | ACGTTGGATGATGGTACACAGAAGCCACAG | |||
| PON3_W2_26f | 41234–41349 | ACGTTGGATGTTTCTCGACAGGTACTTCGC | 126 | G324D |
| PON3_W2_26r | ACGTTGGATGATGGTACACAGAAGCCACAG | |||
| PON3_W2_27f | (43979–44080) | ACGTTGGATGTTGGATTCCTCCTGGAGTAG | 112 | var45486 |
| PON3_W2_27r | ACGTTGGATGTTGAAGGGAGATGACAAGGC | |||
| PON3_W2_28f | (53627–53721) | ACGTTGGATGGTGATATTGAAGTCCTCCTC | 105 | var55146 |
| PON3_W2_28r | ACGTTGGATGTCAAAGAACCTAGACCCAGC | |||
| PON3_W2_31f | (84581–84698) | ACGTTGGATGTTTCTGGCAGAAACTGGCTC | 128 | rs854560 |
| PON3_W2_31r | ACGTTGGATGGCCAGTCCTAGAAAACGTTC | |||
| PON3_W2_32f | (93191–93291) | ACGTTGGATGGGACCTGAGCACTTTTATGG | 111 | rs662 |
| PON3_W2_32r | ACGTTGGATGTAGACAACATACGACCACGC |