Table A5.
Extension primers used in MALDI-TOF MS genotyping.
| No. | Name | Genomic position | Assay | Primer sequence (5′ → 3′) | Mass of ampl. prod. (Da) | SNP ID |
|---|---|---|---|---|---|---|
| 1 | PON3_W2_1e | 42 | 2 | ggCCTTTCTTAAGAAAGGGCTAAT | 7391.8 | var1496 |
| 2 | PON3_W2_3e | 661 | 2 | CACCACCCCTTTGCTCATATCCAA | 7152.7 | var2115 |
| 3 | PON3_W2_4e | 921 | 2 | GTAGGCCAAGTTAAGAAAC | 5869.9 | var2375 |
| 4 | PON3_W2_5e | 3935 | 2 | AATTATCAACACAATCTCTGGAG | 7015.6 | rs11767787 |
| 5 | PON3_2e | 4232 | 1 | TGCTACTTTGCCCGAACT | 5425.5 | rs17885453 |
| 6 | PON3_3e | 4280 | 1 | CCTCCAACCTGGTGTT | 4808.1 | rs17882539 |
| 7 | PON3_6e | 4528 | 1 | ATCTTCTCCAGGATTTGGGGCAC | 7030.6 | rs2072200 |
| 8 | PON3_8e | 5088 | 1 | agTAGTCGGGGAGATGTT | 5634.7 | rs13226149 |
| 9 | PON3_W2_9e | 8372 | 2 | ACGCCTTTCCTGAATT | 4807.1 | var9827 |
| 10 | PON3_10e | 10383 | 1 | cGCCTATGCACAACTATCATTA | 6638.3 | rs10487132 |
| 11 | PON3_W2_13e | 11333 | 2 | GGCTTTTTTAGTTGACTGGTTTACCC | 7949.2 | var12788 |
| 12 | PON3_W2_14e | 11895 | 2 | ggATTTGTTAAATCAATTGCATTTTG | 8005.2 | rs1003504 |
| 13 | PON3_W2_15e | 26521 | 2 | TCGATAAAAACAGAAGGAGG | 6232.1 | rs978903 |
| 14 | PON3_W2_16e | 29055 | 2 | AAAAGGGATTAAAATATCCAGG | 6824.5 | Campo219 |
| 15 | PON3_11e | 29133 | 1 | ggAACCCAAGGGCACAAGC | 5840.8 | rs1053275 |
| 16 | PON3_12e | 29155 | 1 | CCATGTGGATTAAATAATTCTTTGT | 7661 | rs2375003 |
| 17 | PON3_W2_17e | 29330 | 2 | cCAAGGTTTTATACCTATTTATCATTT | 8189.4 | rs2375002 |
| 18 | PON3_13e | 32735 | 1 | gTTCTCCATCTCCTCATTCC | 5929.9 | rs468 |
| 19 | PON3_W2_18#1e | 33772 | 2 | ACCTATCATGTAGACTGTGAG | 6445.2 | Wang133 |
| 20 | PON3_W2_18#2e | 33797 | 2 | TTTCTTCTTACATCTTGCATTT | 6607.3 | rs3757708 |
| 21 | PON3_14e | 33898 | 1 | gTTCCATGTAGACAATACTGT | 6420.2 | rs17879114 |
| 22 | PON3_15e | 33956 | 1 | AGAGAACGTTGTTGTTCCT | 5833.8 | rs17878827 |
| 23 | PON3_W2_20e | 35664 | 2 | CATGGCCCTACCAATAACAC | 6014.9 | var37120 |
| 24 | PON3_16e | 36134 | 1 | GTTCCAGCTGCTGCTA | 4848.2 | Campo219 |
| 25 | PON3_17e | 37354 | 1 | AATAGTGGTCTCTGGTG | 5256.4 | rs2375002 |
| 26 | PON3_18e | 37427 | 1 | cGATCTTCGCTGGACTTA | 5465.6 | rs17880470 |
| 27 | PON3_W2_22e | 38537 | 2 | GCTGCTACATCAGCTACATAGACA | 7305.8 | Y233C |
| 28 | PON3_W2_23e | 39056 | 2 | ACCCCAACAAATTTGTTC | 5402.5 | var40512 |
| 29 | PON3_19e | 39924 | 1 | TTCTCAATGAGGCCTACTCT | 6042.9 | rs2057682 |
| 30 | PON3_20e | 40352 | 1 | GGAGAATTGTTTAGGATCTTTTT | 7114.6 | rs7778771 |
| 31 | PON3_W2_25e | 41269 | 2 | CGCATCCAGAATGTTTTG | 5489.6 | S311T |
| 32 | PON3_W2_26e | 41309 | 2 | ttCACCGTGTATGCCAACAATG | 6694.4 | G324D |
| 33 | PON3_21e | 41438 | 1 | CAATTATCAGTTTACTTTTACAAAATAT | 8519.6 | rs17885558 |
| 34 | PON3_W2_27e | 44028 | 2 | CCATTCTTTCCAAAGGATAG | 6076 | var45486 |
| 35 | PON3_W2_28e | 53688 | 2 | gACCTTGAGGCAATGTG | 5250.4 | var55146 |
| 39 | PON3_W2_31e | 84608 | 2 | AACTGGCTCTGAAGAC | 4890.2 | rs854560 |
| 40 | PON3_W2_32e | 93246 | 2 | gTTCTTGACCCCTACTTAC | 5689.7 | rs662 |