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. 2011 Jul;77(14):4986–5000. doi: 10.1128/AEM.00708-11

Table 1.

Origins and typing data of Aeromonas strains analyzed in this study

Strain Species/complexa Source/organ Additional informationc STb Alleleb
gyrB groL gltA metG ppsA recA
Reference/type strains
    CECT 4199T A. allosaccharophila/A. veronii Anguilla anguilla (eel) 13 14 13 14 13 13 13
    NCIMB 1134 A. bestiarum/A. hydrophila Rainbow trout 4 5 4 5 4 4 4
    DSM 13956T A. bestiarum Infected fish 8 9 8 9 8 8 8
    CECT 838T A. caviae/A. punctata subsp. caviae Epizootic of young guinea pigs 12 13 12 13 12 12 12
    NCIMB 882 A. caviae Goldfish (Crassius auratus) 3 4 3 4 3 3 3
    DSM 11577T A. encheleia Healthy eel in freshwater 7 8 7 8 7 7 7
    CECT 4487T A. enteropelogenes Human feces 18 20 19 20 19 17 19
    CECT 4255T A. enteropelogenes/A. trota Human feces 16 18 17 18 17 16 17
    DSM 17534T A. eucrenophila Freshwater fish 9 10 9 10 9 9 9
    CECT 4228T A. jandaei Feces from patient with diarrhea 14 15 14 15 14 14 14
    ATCC 7966T A. hydrophila Milk 1 1 1 1 1 1 1
    CECT 398 A. hydrophila Human feces of a child with diarrhea 11 12 11 12 11 11 11
    DSM 4881T A. media Fish farm effluent 6 7 6 7 6 6 6
    DSM 19604T A. popoffii Drinking water 10 11 10 11 10 10 10
    NCIMB 1109 A. salmonicida subsp. achromogenes Diseased sea trout, Salmo trutta 3 2 3 2 0 2
    NCIMB 2020 A. salmonicida subsp. masoucida Masou, Oncorhynchus sp. 2 2 3 2 0 2
    NCIMB 1102T A. salmonicida subsp. salmonicida Atlantic salmon 2 2 2 2 2 2 2
    DSM 17445T A. sharmana Warm spring 82
    CECT 4240T A. schubertii Forehead abscess 15 16 15 16 15 15 15
    CECT 4245T A. sobria Fish 19 21 20 21 20 18 20
    NCIMB 75 A. sobria Diseased freshwater fish 5 6 5 6 5 5 5
    CECT 4257T A. veronii bv. veronii Sputum of drowning victim 17 19 18 19 18 16 18
    CECT 4246 A. veronii bv. sobria Infected frog (red leg disease) 17 16 17 16 0 16
Field strains
    Ae1 A. sobria-A. veronii European catfish (Ameiurus melas)/kidney H1W2S1 20 22 21 22 21 19 20
    Ae2 A. hydrophila Rainbow trout (Oncorhynchus mykiss)/kidney H1W1S1 21 23 22 23 22 20 21
    Ae3 A. sobria-A. veronii Rainbow trout (Oncorhynchus mykiss)/kidney H1W1S2 22 24 23 24 23 21 22
    Ae4 A. sobria-A. veronii Sea bass (Dicentrarchus labrax)/kidney H3W2S2 23 25 24 25 24 22 23
    Ae5 A. sobria-A. veronii Sturgeon (Acipenser sp.)/kidney H1W2S2 24 26 25 26 25 23 24
    Ae6 A. hydrophila Northern pike (Esox lucius)/kidney H1W2S3 25 27 26 27 26 24 25
    Ae7 A. sobria-A. veronii Trout (Salmo trutta)/kidney H1W1S3 26 28 27 28 27 25 26
    Ae8 A. sobria-A. veronii European catfish (Ameiurus melas)/kidney H1W2S3 27 29 28 17 21 26 27
    Ae9 A. hydrophila Crayfish (Procambarus clarkii)/hemolymph H1W2S4 28 30 29 29 28 27 28
    Ae10 A. sobria-A. veronii Carp (Cyprinus carpio)/kidney H1W2S3 29 31 30 30 29 28 29
    Ae11 A. sobria-A. veronii Carp (Cyprinus carpio)/kidney H1W2S4 30 24 31 31 30 29 30
    Ae12 A. sobria-A. veronii Carp (Cyprinus carpio)/kidney H1W2S4 31 25 32 32 31 3o 31
    Ae13 A. sobria-A. veronii European grayling (Thymallus thymallus)/kidney H1W1S4 32 26 33 33 32 31 33
    Ae14 A. sobria-A. veronii Arctic char (Salvelinus alpinus)/kidney H1W1S4 33 32 34 34 33 32 34
    Ae15 A. sobria-A. veronii Arctic char (Salvelinus alpinus)/kidney H1W1S4 34 33 35 35 34 33 35
    Ae16 A. hydrophila Rainbow trout (Oncorhynchus mikiss)/kidney H1W1S4 35 34 36 36 35 34 36
    Ae17 A. sobria-A. veronii Trout (Salmo trutta)/kidney H1W1S1 36 35 37 37 36 35 37
    Ae18 A. sobria-A. veronii Eel (Anguilla anguilla)/kidney H2W2S4 37 36 38 38 37 36 38
    Ae19 A. hydrophila Sea bream (Sparus aurata)/kidney H3W2S1 2 2 2 2 2 2 2
    Ae20 A. sobria-A. veronii Carp (Cyprinus carpio)/kidney H1W2S1 38 37 39 39 38 37 39
    Ae21 A. sobria-A. veronii Goldfish (Carassius auratus)/spleen H1W2S2 39 38 40 40 39 38 40
    Ae22 A. caviae-A. media Sturgeon (Acipenser sp.)/kidney H1W2S2 40 39 41 41 40 39 41
    Ae23 A. sobria-A. veronii Goldfish (Carassius auratus)/kidney H1W2S3 41 40 42 42 41 40 42
    Ae24 A. sobria-A. veronii Carp (Cyprinus carpio)/kidney H1W2S3 42 41 43 43 42 41 43
    Ae25 A. sobria-A. veronii Goldfish (Carassius auratus)/spleen H1W2S3 43 42 44 44 43 42 44
    Ae26 A. sobria-A. veronii Arctic char (Salvelinus alpinus)/liver H1W1S3 44 43 45 45 27 43 45
    Ae27 A. hydrophila Arctic char (Salvelinus alpinus)/spleen H1W1S3 45 44 46 46 44 44 46
    Ae28 A. caviae-A. media Goldfish (Carassius auratus)/spleen H1W2S3 46 45 47 47 45 45 47
    Ae29 A. sobria-A. veronii Sturgeon (Acipenser sp.)/kidney H1W2S3 47 46 48 48 46 46 48
    Ae30 A. sobria-A. veronii Channel catfish (Ictalurus punctatus)/kidney H1W2S3 48 47 49 49 47 47 49
    Ae31 A. hydrophila Trout (Salmo trutta)/kidney H1W1S3 2 2 2 2 2 2 2
    Ae32 A. sobria-A. veronii European catfish (Ameiurus melas)/liver H1W2S3 49 48 50 50 48 48 50
    Ae33 A. sobria-A. veronii European catfish (Ameiurus melas)/liver H1W2S3 50 49 51 51 49 49 51
    Ae34 A. sobria-A. veronii Carp (Cyprinus carpio)/liver H1W2S3 51 50 52 50 50 50 52
    Ae35 A. sobria-A. veronii European catfish (Ameiurus melas)/kidney H1W2S4 52 51 53 52 51 51 53
    Ae36 A. sobria/A. veronii Rainbow trout (Oncorhynchus mikiss)/kidney H1W1S4 53 52 54 31 52 52 54
    Ae37 A. hydrophila Carp (Cyprinus carpio)/kidney H1W2S4 54 14 55 14 53 53 13
    Ae38 A. sobria-A. veronii Rainbow trout (Oncorhynchus mikiss)/kidney H1W1S4 55 53 56 53 54 54 55
    Ae39 A. sobria-A. veronii Sea bream (Sparus aurata)/kidney H3W2S1 56 54 57 54 55 55 56
    Ae40 A. sobria-A. veronii Trout (Salmo trutta)/kidney H1W1S1 38 37 39 39 38 37 39
    Ae41 A. hydrophila Trout (Salmo trutta)/kidney H1W1S1 57 9 58 55 8 56 57
    Ae42 A. sobria-A. veronii Goldfish (Carassius auratus)/kidney H1W2S1 58 55 59 56 56 57 58
    Ae43 A. hydrophila Rainbow trout (Oncorhynchus mykiss)/kidney H1W1S1 59 56 60 57 57 58 59
    Ae44 A. sobria-A. veronii Rainbow trout (Oncorhynchus mykiss)/kidney H1W1S1 60 57 61 58 58 59 60
    Ae45 A. hydrophila Rainbow trout (Oncorhynchus mykiss)/kidney H1W1S1 38 37 39 39 38 37 39
    Ae46 A. hydrophila Trout (Salmo trutta)/kidney H1W1S1 2 2 2 2 2 2 2
    Ae47 A. sobria-A. veronii Rainbow trout (Oncorhynchus mykiss)/kidney H1W1S1 61 58 62 59 59 60 61
    Ae48 A. sobria-A. veronii Carp (Cyprinus carpio)/kidney H1W2S2 62 38 63 60 60 61 62
    Ae49 A. sobria-A. veronii European perch (Perca fluviatilis)/kidney H1W2S2 63 59 64 61 61 62 63
    Ae50 A. sobria-A. veronii Carp (Cyprinus carpio)/kidney H1W2S2 64 60 65 62 62 63 64
    Ae51 A. hydrophila Crayfish (Procambarus clarkii)/hemolymph H1W2S3 65 61 66 63 63 64 65
    Ae52 A. sobria-A. veronii Crayfish (Procambarus clarkii)/hemolymph H1W2S3 66 62 67 64 64 65 66
    Ae53 A. sobria-A. veronii Carp (Cyprinus carpio)/kidney H1W2S3 67 38 40 40 39 66 40
    Ae54 A. sobria-A. veronii Crayfish (Procambarus clarkii)/hemolymph H1W2S3 68 63 68 65 65 67 67
    Ae55 A. sobria-A. veronii Manila clam (Ruditapes philippinarum)/foot H3W2S2 69 64 69 66 66 68 68
    Ae56 A. sobria-A. veronii Freshwater mussel (Anodonta sp.)/foot H1W2S3 70 65 70 67 67 69 69
    Ae57 A. sobria-A. veronii Sea bass (Dicentrarchus labrax)/kidney H3W2S1 71 66 71 68 68 70 70
    Ae58 A. hydrophila Carp (Cyprinus carpio)/kidney H1W2S1 72 67 72 69 69 71 71
    Ae59 A. sobria-A. veronii Sea bass (Dicentrarchus labrax)/kidney H3W2S3 23 25 24 25 24 22 24
    Ae60 A. sobria-A. veronii Eel (Anguilla anguilla)/kidney H2W2S3 73 68 73 70 70 72 11
    Ae61 A. hydrophila Flathead gray mullet (Mugil cephalus)/kidney H2W2S4 74 69 74 71 71 73 72
    Ae62 A. hydrophila Sea bream (Sparus aurata)/kidney H3W2S1 75 70 75 72 72 74 73
    Ae63 A. hydrophila Rainbow trout (Oncorhynchus mykiss)/kidney H1W1S2 76 71 76 73 73 75 74
    Ae64 A. sobria-A. veronii Chub (Leuciscus cephalus)/skin H2W2S2 77 66 77 74 74 76 75
    Ae65 A. hydrophila Carp (Cyprinus carpio)/skin H1W2S2 78 72 78 75 44 77 76
    Ae66 A. sobria-A. veronii Carp (Cyprinus carpio)/skin H1W2S2 79 73 79 76 75 78 77
    Ae67 A. sobria-A. veronii Rainbow trout (Oncorhynchus mykiss)/brain H1W1S2 80 14 80 14 13 79 78
    Ae68 Atypical Rainbow trout (Oncorhynchus mykiss)/brain H1W1S3 81 74 81 77 76 80 79
    Ae69 A. sobria-A. veronii Trout (Salmo trutta)/kidney H1W1S3 82 75 82 78 20 81 80
    Ae70 A. sobria-A. veronii Trout (Salmo trutta)/kidney H1W1S3 83 76 83 39 77 82 81
    Ae71 A. sobria-A. veronii European perch (Perca fluviatilis)/kidney H1W2S3 84 77 84 79 78 83 82
    Ae72 A. hydrophila European catfish (Ameiurus melas)/liver H1W2S4 85 78 85 80 79 84 83
    Ae73 A. sobria-A. veronii Rainbow trout (Oncorhynchus mykiss)/skin H1W1S4 86 79 86 81 80 85 84
    Ae74 A. sobria-A. veronii Sea bream (Sparus aurata)/brain H3W2S3 87 66 87 82 81 86 85
    Ae75 A. sobria-A. veronii European perch (Perca fluviatilis)/kidney H1W2S3 87 66 87 82 81 86 85
    Ae76 A. sobria-A. veronii Rainbow trout (Oncorhynchus mykiss)/eyes H1W1S3 88 80 88 83 82 87 86
    Ae77 A. sobria-A. veronii Tench (Tinca tinca)/spleen H1W2S4 89 81 89 84 83 88 87
a

The phenotypic group names (i.e., complexes, which are shown for field isolates) were assigned according to the proposed attribution provided by Khajanchi et al. (32), using the keys of identification previously described (1, 13).

b

STs and alleles were determined by MLST.

c

H, habitat (1, freshwater; 2, brackish water; 3, marine water); W, water (1, cold water; 2, warm water); S, season (1, winter; 2, spring; 3, summer; 4, autumn).