Table 3.
Genes encoding cation- and iron-carrying compounds differentially transcribed in either H7858 or F6854a
| Locus | Protein description | Symbol | ANOVA model A treatment effect (fold) for: |
ANOVA model B interaction effect (fold)b for: |
||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| H7858 |
F6854 |
H7858 | F6854 | |||||||||
| Transcription pattern | SDA vs CTRL | PL vs CTRL | PLSDA vs CTRL | Transcription pattern | SDA vs CTRL | PL vs CTRL | PLSDA vs CTRL | |||||
| LMOF6854 _0506 | Magnesium and cobalt transport protein CorA, putative | No probec | H | −1.1 | −1.3 | −1.6 | — | |||||
| lmo0541 | Iron compound ABC transporter, substrate-binding protein | —d | — | — | — | H | 1.0 | −1.2 | −1.9 | — | — | |
| lmo0641 | Cation-transporting ATPase, E1-E2 family | G | −1.5 | −1.4 | −3.1 | — | — | — | — | −1.5 | — | |
| lmo0818 | Cation-transporting ATPase, E1-E2 family | No probe | J | 1.0 | 1.0 | −1.6 | −1.6 | |||||
| LMOH7858 _0876 | Cation transport ATPase, E1-E2 family | L | 1.2 | 1.0 | −2.5 | No probe | −2.7 | |||||
| lmo0990 | MATE efflux family protein | dinF | — | — | — | — | H | −1.2 | −1.2 | −1.9 | — | — |
| lmo1073 | Hemin ABC transporter, hemin-binding protein, putative | No probe | H | −1.1 | −1.1 | −1.7 | — | |||||
| lmo1100 | Cation transport ATPase, E1-E2 family | L | 1.1 | 1.1 | −2.2 | No probe | −2.6 | |||||
| lmo1846 | MATE efflux family protein | G | 1.0 | −1.2 | −2.0 | — | — | — | — | — | — | |
| lmo1848 | Iron (chelated) ABC transporter, permease protein | psaC | A | 1.1 | 1.1 | 1.7 | B | 1.1 | 1.4 | 2.2 | — | — |
| lmo1852 | Copper ion-binding protein | copP | — | — | — | — | J | 1.0 | 1.0 | −2.1 | — | — |
| lmo2087 | MATE efflux family protein, putative | G | −1.8 | −1.3 | −25.3 | H | −1.3 | −1.6 | −8.2 | −10.9 | −4.1 | |
| lmo2088 | Transcriptional regulator, TetR family | C | 1.9 | 1.3 | 2.2 | B | 1.2 | 1.2 | 2.9 | |||
| lmo2105 | Ferrous iron transport protein B | feoB | L | 1.8 | 2.2 | 1.3 | — | — | — | — | −2.9 | — |
| lmo2378 | Na+/H+ antiporter, MnhA component | mnhA | L | 1.6 | 2.0 | 1.2 | — | — | — | — | −2.8 | — |
| lmo2379 | Na+/H+ antiporter component | mnhB | A | 1.1 | 1.2 | 2.4 | — | — | — | — | 1.9 | — |
| lmo2382 | Na+/H+ antiporter, MnhE component | mnhE | A | 1.0 | 1.1 | 1.5 | — | — | — | — | — | — |
| lmo2575 | Cation efflux family protein | czcD | L | 1.1 | 1.0 | −1.5 | H | −1.3 | −1.7 | −13.3 | −1.7 | — |
| lmo2600 | Cobalt ABC transporter, ATP-binding protein | G | −1.1 | −1.1 | −1.8 | B | 1.2 | 1.2 | 2.3 | — | — | |
| lmo2601 | Cobalt ABC transporter, ATP-binding protein | L | 1.2 | 1.0 | −2.1 | — | — | — | — | −2.5 | — | |
| lmo2680 | Potassium-transporting ATPase, C subunit | kdpC | K | 1.1 | −1.7 | −1.1 | Unassigned | 1.3 | −1.7 | 1.0 | — | — |
| lmo2725 | MATE efflux family protein | C | 1.1 | 1.0 | 2.0 | — | — | — | — | 2.0 | — | |
| lmo2726 | Transcriptional regulator, MarR family, putative | G | −1.5 | −1.2 | −3.7 | H | −1.1 | −1.2 | −2.3 | −2.0 | ||
a
Genes assigned the JCVI subrole cation- and iron-carrying compounds and the two differentially transcribed putative regulators in the same operon as genes with this subrole.
b
This interaction parameter estimate represents the effect of lactate in the presence of diacetate versus the effect of lactate without diacetate present.
c
There was no valid oligonucleotide probe on the array for the locus in the indicated strain.
d
—, the gene was not significantly differentially transcribed in the indicated ANOVA model.