Table 2.
Locus | Targeta | Fragment (gene)b size (bp) | No. of alleles | Avg GC content (%) | Ksc | Kad | Ka/Ks | πe | No. (%) of polymorphic sites |
||
---|---|---|---|---|---|---|---|---|---|---|---|
Total | Toxic | Nontoxic | |||||||||
adk | Bsph_4593 | 531 (654) | 8 | 39.5 | 0.1013 | 0.0075 | 0.0740 | 0.0249 | 77 (14.5) | 2 (0.4) | 72 (13.6) |
ccpA | Bsph_4200 | 579 (1,005) | 8 | 40.4 | 0.3192 | 0.0059 | 0.0185 | 0.0428 | 132 (22.8) | 1 (0.2) | 128 (21.6) |
pycA | Bsph_1392 | 534 (3,435) | 9 | 42.0 | 0.3608 | 0.0086 | 0.0238 | 0.0480 | 133 (24.9) | 2 (0.4) | 128 (24.0) |
glyA | Bsph_1005 | 552 (1,242) | 9 | 40.2 | 0.2419 | 0.0054 | 0.0223 | 0.0414 | 117 (21.2) | 3 (0.6) | 105 (19.0) |
glcK | Bsph_1259 | 654 (909) | 12 | 37.4 | 0.3872 | 0.0463 | 0.1196 | 0.0715 | 250 (38.2) | 6 (0.9) | 235 (36.0) |
glpF | Bsph_0241 | 414 (804) | 11 | 39.0 | 0.2488 | 0.0164 | 0.0659 | 0.0496 | 107 (25.8) | 7 (1.7)f | 104 (25.1) |
Values in parentheses represent the total length of the gene.
Ks, number of synonymous changes per synonymous site.
Ka, number of nonsynonymous changes per nonsynonymous site.
π, nucleotide diversity per site.
Toxic strain LP1-G shared an identical glpF gene fragment with nontoxic strain Dak614 and, therefore, was not included in the analysis.