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. 2011 Aug;79(8):3117–3130. doi: 10.1128/IAI.05136-11

Table 2.

Oligonucleotide primers used in these studies

Primera Sequence (5′–3′)b Purpose Reference or source
hk1-F CGTCAATTTATTTTCTAAGGATATTTTC qRT-PCR This work
hk1-R TGCTTCGTCTTCAATTTCACT qRT-PCR This work
rrp1-F AAGGTGCTTACGAGATTGAG qRT-PCR This work
rrp1-R TCTGTGGAACTTCTTGAACTAA qRT-PCR This work
ups.hk1-5′ GGGTCCTGGAAGAATACCAGGTTG Cloning and mutagenesis This work
dwns.hk1-3′ GTGGGGAGAATCATCCACAATTAA Cloning and mutagenesis This work
hk1-KO-5′ CCCATTCAACATTTTTATCCAATTTT Confirm insertion within hk1 This work
hk1-KO-3′ TGGACCAGCATCATCATTGCTTAGGTCTTTTG Confirm insertion within hk1 This work
hk1-KO junc-5′ AGGTTAAAAAACGTTAACACCAT Confirm complementation This work
flgB-5′ GCGCCATGGTACCCGAGCTTCAAGGAAGA Construction pSP1G This work
gent-3′ GCGCCATGGTTAGGTGGCGGTACTTGGG Construction pSP1G This work
Hk1 compl-5′ GCGGGATCCGGGTCCTGGAAGAATACCAG Complementation This work
Hk1 compl-3′ GCGCTGCAGTTCCACTGCTAATATCTCTTATT Complementation This work
flaB-F CTTTTCTCTGGTGAGGGAGCTC qRT-PCR, qPCR 53
flaB-R GCTCCTTCCTGTTGAACACCC qRT-PCR, qPCR 53
flaB-Probe CTTGAACCGGTGCAGCCTGAGCA qRT-PCR, qPCR 53
nidogen-F CCCCAGCCACAGAATACCAT qPCR 81
nidogen-R AAAGGCGCTACTGAGCCGA qPCR 81
nidogen-probe CCGGAACCTTCCCACCCAGC qPCR 81
a

F, forward; R, reverse.

b

Restriction sites are in boldface.