Table 3.
Primer name | Sequence (5′–3′)a | PCR amplification |
---|---|---|
BprC for | AAGCTTACGTGTTGCGCGACATTC | Forward primer for bprC ORFb |
BprC rev | AAGCTTCGGAATCGACATTCATCGT | Reverse primer for bprC ORF |
VirA for | GGTACCTATTCGCCGACCTCTGAGAC | Forward primer for virA, virAG ORFs |
VirA rev | AAGCTTCGACAGGTAATTGCAAAGCA | Reverse primer for virA ORF |
VirG for | GGTACCGGCGCAGTACAGGAGAGGAC | Forward primer for virG ORF |
VirG rev | AAGCTTCCGACGAGCAAATCCTTG | Reverse primer for virA, virAG ORFs |
PtssA for | TTGAATTCATGGAATTTCCGTGCATAGG | Forward primer for tssA promoter and ORF |
PtssA rev | TTGAATTCAAGCTTCCATGGTCGTCTGTTCC | Reverse primer for tssA promoter and ORF |
Phcp1 for | GAATTCAAGCTCGAAAAGCGCTAGG | Forward primer for hcp1 promoter and ORF |
Phcp1 rev | AAGCTTATCAGCCATTCGTCCAGTTT | Reverse primer for hcp1 promoter and ORF |
TssAB-up for | GAATTCGATGCACATCGACAGGATC | Forward primer for upstream of tssAB |
TssAB-up rev | GCGATAGACGATGTTGACC | Reverse primer for upstream of tssAB |
TssAB-dn for | ATCCAGAACAAGATCCCGA | Forward primer for downstream of tssAB |
TssAB-dn rev | AAGCTTTTCCAACGAGTATCCCGAA | Reverse primer for downstream of tssAB |
Restriction sites are underlined.
ORF, open reading frame.