Table 3.

Correlation analysis between the action of CodY and CovRS using the whole-genome approach with phage genomes included

Correlation	Growth phase	r (df)a	P value	Regression line equation
codY mutant vs covRS mutant	ME	−0.05 (1743)	0.0535	y = −0.07x + 0.07
codY mutant vs codY-covRS mutant	ME	0.14 (1743)	<0.0001	y = 0.24x − 0.15
codY mutant vs covRS mutant	ME	−0.01 (112)	0.9124	y = −0.01x − 0.13
codY mutant vs codY-covRS mutant	ME	0.26 (112)	0.0048	y = 0.40x + 0.10
codY mutant vs covRS mutant	ST	0.08 (1743)	0.0016	y = 0.15x + 1.00
codY mutant vs codY-covRS mutant	ST	0.16 (1743)	<0.0001	y = 0.26x + 0.70
codY mutant vs covRS mutant	ST	0.03 (112)	0.7310	y = 0.05x + 1.19
codY mutant vs codY-covRS mutant	ST	0.17 (112)	0.0769	y = 0.24x + 1.18

^aDegree of freedom with all genes included(df = 1,743) or gene expression ratios cut off at I ≥ 0.8 and D ≤ −0.8(df = 112).