Table 2.
Data processing and refinement statistics for the PCV2 crystal structurea
| Statistic or parameterb | Value for statistic or parameter |
|
|---|---|---|
| Useful data | Outer shell | |
| Data collection statistics | ||
| Resolution range (Å) | 40.0–2.35 | 2.43–2.35 |
| Completeness (%) | 68.7 | 44.8 |
| No. of unique reflections | 1,002,451 | 65,270 |
| Rmerge (%)c | 7.1 | 27.8 |
| Avg I/σI | 6.2 | 1.4 |
| Redundancyd | 1.9 | 1.3 |
| Refinement statistics | ||
| Resolution range (Å) | 40.0–2.35 | 2.46–2.35 |
| Completeness (%) | 68.7 | 44.9 |
| No. of unique reflections | 1,002,451 | 81,840 |
| Rcryst (%)e | 24.5 | 39.6 |
| No. of atomsf (Ca atoms) | 1,740 (194) | |
| No. of water molecules and ions | 131 | |
| Protein geometry and thermal parameters | ||
| RMSDb from ideality | ||
| Bond length (Å) | 0.007 | |
| Angle (°) | 1.4 | |
| Average temperature factor (Å2) | ||
| Protein | 25.8 | |
| Water molecules and ions | 38.6 | |
| Ramachandran plot (%) | ||
| Favored | 89.2 | |
| Allowed | 10.2 | |
| Outliers | 0.6 | |
Values given are for data with I/σI ≥ 0. The space group is P1 with unit cell dimensions a = 193.6 Å, b = 202.2 Å, c = 231.0 Å, α = 90.0°, β = 89.3°, and γ = 90.1°.
I/σI, measured intensity divided by measured error; RMSD, root mean square deviation.
Rmerge = (ΣhΣi (Ihi − <Ih>)/ΣhΣi Ih) × 100 where <Ih> is the mean of the Ihi observations of reflection h.
Redundancy is the number of observations/number of unique reflections.
Rcryst = (Σh|Fo − Fc|/ΣhFo) where Fo and Fc are the observed and calculated structure factors, respectively.
Number for all nonhydrogen atoms, including water molecules and ions.