Table III. Overrepresented GO terms in organ-specific genes.
GO annotation was determined for each transcript by determining the GO annotation for its Arabidopsis homolog (E-value cutoff of 1e-6) using TAIR. P was calculated by the hypergeometric method. FDR was controlled to 0.05.
| Organ | GO Term | GO Identifier | Organ-Specific Genes with the GO Identifier | Whole Probe Sets with the GO Identifier | P |
| % | |||||
| Cotyledon | Chloroplast thylakoid membrane | GO:0009535 | 7.32 | 0.74 | 3.04E-18 |
| Chloroplast ribulose bisphosphate carboxylase complex | GO:0009573 | 0.91 | 0.03 | 1.03E-04 | |
| Oxygen-evolving complex | GO:0009654 | 1.22 | 0.09 | 2.08E-04 | |
| Cys protease inhibitor activity | GO:0004869 | 0.91 | 0.05 | 6.33E-04 | |
| Cytochrome b6f complex | GO:0009512 | 0.61 | 0.02 | 2.25E-03 | |
| Hook | Biological process | GO:0008150 | 9.72 | 1.10 | 1.41E-05 |
| Endomembrane system | GO:0012505 | 16.67 | 5.74 | 7.68E-04 | |
| Ubiquitin ligase complex | GO:0000151 | 4.17 | 0.33 | 1.71E-03 | |
| DNA primase activity | GO:0003896 | 1.39 | 0.00 | 2.74E-03 | |
| Hypocotyl | Cell wall | GO:0005618 | 3.90 | 0.32 | 5.00E-08 |
| Metabolic process | GO:0008152 | 3.90 | 1.07 | 9.22E-04 | |
| Oxidoreductase activity | GO:0016491 | 2.16 | 0.40 | 2.28E-03 | |