Table I. List of genes showing concordant or opposite transcriptomic patterns between the effects of acclimation to HL and the effects of oxidative stress in LL- and HL-acclimated cells, as represented in Figure 7C.
Asterisks indicate genes down-regulated by HL acclimation or up-regulated by LL acclimation.
| Open Reading Frame Identifier | Product |
| Concordant genes | |
| Up-regulated by ROS in LL cells and by HL acclimation | |
| 0203 | Putative potassium channel, VIC family |
| 0343 | Putative 3-methyladenine DNA glycosylase |
| 0514 | Predicted HAD superfamily phosphatase |
| 0791 | HIT family hydrolase protein |
| 0947 | Conserved hypothetical protein |
| 1068 | Uncharacterized conserved membrane protein |
| 1501 | Hypothetical protein |
| 2354 | Conserved hypothetical membrane protein |
| Down-regulated by ROS in LL cells and by HL acclimation* | |
| 1029, 2182 | Conserved hypothetical proteins |
| 1348 | Hypothetical protein |
| 1566 | Uncharacterized conserved membrane protein |
| 1732 | Sulfate ion transporter |
| 1796 | Uncharacterized conserved secreted protein, pili subunit superfamily |
| 2068 | β-Glycosidase (chitinase-like), family 18 |
| 2167 | HlyD-like secretion protein superfamily, related to AcrA |
| galE_0242 | UDP-Glc 4-epimerase |
| mpeY_0494 | Putative phycobilin:C-PE II lyase |
| psbA_0784 | PSII protein D1 |
| rpoD_2501 | Alternative RNA polymerase σ factor, σ-70 family |
| 15_Syn_WH7803i235_s415, 208_Syn_WH7803i519_s480, 309_Syn_WH7803i1818_q350 | |
| Up-regulated by ROS in HL cells and by HL acclimation | |
| 0947 | Conserved hypothetical protein |
| metK_0513 | S-Adenosyl-Met synthetase |
| tmk_2244 | Thymidylate kinase |
| Down-regulated by ROS in HL cells and by HL acclimation* | |
| None | |
| Discordant genes | |
| Up-regulated by ROS in LL cells and down-regulated by HL acclimation* | |
| 0095, 0096, 0934, 1953 | Hypothetical proteins |
| 1500 | Conserved hypothetical protein |
| 1797, 2532 | Uncharacterized conserved secreted protein |
| 1799 | Uncharacterized conserved secreted protein, pili subunit superfamily |
| 2116 | Uncharacterized membrane protein |
| lexA_1680 | SOS-response transcriptional repressor LexA |
| recA_0439 | Recombinase A |
| Down-regulated by ROS in LL cells and up-regulated by HL acclimation | |
| 0347 | Conserved hypothetical protein |
| 1329 | 30S ribosomal protein S2 |
| 2236 | Porin, P stress induced |
| petF_1580 | Ferredoxin |
| ppiB_1251 | Peptidyl-prolyl cis-trans-isomerase |
| psb29_1213 | PSII biogenesis protein Psb29 |
| rplE_0422, rpmF_1115 | 50S ribosomal proteins L5 and L32 |
| Up-regulated by ROS in HL cells and down-regulated by HL acclimation* | |
| 0095, 0096, 0934, 1953 | Hypothetical proteins |
| 0543 | LysM-repeat protein |
| 0739, 1797 | Uncharacterized conserved secreted proteins |
| 0971 | Possible multisubunit Na+/H+ antiporter, MnhD subunit |
| 1117 | Uncharacterized conserved membrane protein |
| 0785, 0940, 1497, 1500, 2182 | Conserved hypothetical proteins |
| 1732 | Sulfate ion transporter |
| 1796, 1798, 1799 | Uncharacterized conserved secreted proteins, pili subunit superfamily |
| 2116 | Uncharacterized membrane protein |
| 2208 | Iron-sulfur oxidoreductase |
| 2329 | para-Aminobenzoate synthase component II |
| bicA_0719 | SulP-type bicarbonate transporter |
| ctaD_1872 | Cytochrome c oxidase subunit I |
| hemD_2221 | Uroporphyrinogen-III synthase |
| lexA_1680 | SOS-response transcriptional repressor LexA |
| mpeY_0494 | Putative phycobilin:C-PE II lyase |
| recA_0439 | Recombinase A |
| trpB_2299 | Trp synthase β-chain |
| Down-regulated by ROS in HL cells and up-regulated by HL acclimation | |
| 1068 | Uncharacterized conserved membrane protein |
| 1115 | 50S ribosomal protein L32 |
| 0347, 1312, 1313, 1379, 1423, 2521 | Conserved hypothetical proteins |
| 2002 | Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein) |
| 2198 | Inositol monophosphatase family protein |
| 2257 | RNA-binding protein, RRM domain |
| 2494 | Conserved hypothetical protein specific to cyanobacteria |
| amt_0297 | Ammonium transporter |
| focA_2493 | FNT formate/nitrate transporter family protein |
| glnAI_1347 | Gln synthetase, Glu ammonia ligase |
| mraY_2522 | Phospho-N-acetylmuramoyl-pentapeptide-transferase |
| nusA_2077 | Transcription elongation factor NusA |
| pdxJ_1371 | Pyridoxal phosphate biosynthetic protein PdxJ |
| petF_1580 | Ferredoxin |
| ppiB_1251 | Peptidyl-prolyl cis-trans-isomerase |
| rplE_0422 | 50S ribosomal proteins L5, L15, L19, L23 |
| rpsB_1329 | 30S ribosomal proteins S2, S5, S14, S16 |
| pstSII_1045 | ABC transporter, substrate-binding protein, phosphate |
| 325_Syn_WH7803i1973_q360 | |