Skip to main content
. 2011 Jun 13;156(4):1934–1954. doi: 10.1104/pp.111.174714

Table I. List of genes showing concordant or opposite transcriptomic patterns between the effects of acclimation to HL and the effects of oxidative stress in LL- and HL-acclimated cells, as represented in Figure 7C.

Asterisks indicate genes down-regulated by HL acclimation or up-regulated by LL acclimation.

Open Reading Frame Identifier Product
Concordant genes
 Up-regulated by ROS in LL cells and by HL acclimation
  0203 Putative potassium channel, VIC family
  0343 Putative 3-methyladenine DNA glycosylase
  0514 Predicted HAD superfamily phosphatase
  0791 HIT family hydrolase protein
  0947 Conserved hypothetical protein
  1068 Uncharacterized conserved membrane protein
  1501 Hypothetical protein
  2354 Conserved hypothetical membrane protein
 Down-regulated by ROS in LL cells and by HL acclimation*
  1029, 2182 Conserved hypothetical proteins
  1348 Hypothetical protein
  1566 Uncharacterized conserved membrane protein
  1732 Sulfate ion transporter
  1796 Uncharacterized conserved secreted protein, pili subunit superfamily
  2068 β-Glycosidase (chitinase-like), family 18
  2167 HlyD-like secretion protein superfamily, related to AcrA
  galE_0242 UDP-Glc 4-epimerase
  mpeY_0494 Putative phycobilin:C-PE II lyase
  psbA_0784 PSII protein D1
  rpoD_2501 Alternative RNA polymerase σ factor, σ-70 family
  15_Syn_WH7803i235_s415, 208_Syn_WH7803i519_s480, 309_Syn_WH7803i1818_q350
 Up-regulated by ROS in HL cells and by HL acclimation
  0947 Conserved hypothetical protein
  metK_0513 S-Adenosyl-Met synthetase
  tmk_2244 Thymidylate kinase
 Down-regulated by ROS in HL cells and by HL acclimation*
  None
Discordant genes
 Up-regulated by ROS in LL cells and down-regulated by HL acclimation*
  0095, 0096, 0934, 1953 Hypothetical proteins
  1500 Conserved hypothetical protein
  1797, 2532 Uncharacterized conserved secreted protein
  1799 Uncharacterized conserved secreted protein, pili subunit superfamily
  2116 Uncharacterized membrane protein
  lexA_1680 SOS-response transcriptional repressor LexA
  recA_0439 Recombinase A
 Down-regulated by ROS in LL cells and up-regulated by HL acclimation
  0347 Conserved hypothetical protein
  1329 30S ribosomal protein S2
  2236 Porin, P stress induced
  petF_1580 Ferredoxin
  ppiB_1251 Peptidyl-prolyl cis-trans-isomerase
  psb29_1213 PSII biogenesis protein Psb29
  rplE_0422, rpmF_1115 50S ribosomal proteins L5 and L32
 Up-regulated by ROS in HL cells and down-regulated by HL acclimation*
  0095, 0096, 0934, 1953 Hypothetical proteins
  0543 LysM-repeat protein
  0739, 1797 Uncharacterized conserved secreted proteins
  0971 Possible multisubunit Na+/H+ antiporter, MnhD subunit
  1117 Uncharacterized conserved membrane protein
  0785, 0940, 1497, 1500, 2182 Conserved hypothetical proteins
  1732 Sulfate ion transporter
  1796, 1798, 1799 Uncharacterized conserved secreted proteins, pili subunit superfamily
  2116 Uncharacterized membrane protein
  2208 Iron-sulfur oxidoreductase
  2329 para-Aminobenzoate synthase component II
  bicA_0719 SulP-type bicarbonate transporter
  ctaD_1872 Cytochrome c oxidase subunit I
  hemD_2221 Uroporphyrinogen-III synthase
  lexA_1680 SOS-response transcriptional repressor LexA
  mpeY_0494 Putative phycobilin:C-PE II lyase
  recA_0439 Recombinase A
  trpB_2299 Trp synthase β-chain
 Down-regulated by ROS in HL cells and up-regulated by HL acclimation
  1068 Uncharacterized conserved membrane protein
  1115 50S ribosomal protein L32
  0347, 1312, 1313, 1379, 1423, 2521 Conserved hypothetical proteins
  2002 Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)
  2198 Inositol monophosphatase family protein
  2257 RNA-binding protein, RRM domain
  2494 Conserved hypothetical protein specific to cyanobacteria
  amt_0297 Ammonium transporter
  focA_2493 FNT formate/nitrate transporter family protein
  glnAI_1347 Gln synthetase, Glu ammonia ligase
  mraY_2522 Phospho-N-acetylmuramoyl-pentapeptide-transferase
  nusA_2077 Transcription elongation factor NusA
  pdxJ_1371 Pyridoxal phosphate biosynthetic protein PdxJ
  petF_1580 Ferredoxin
  ppiB_1251 Peptidyl-prolyl cis-trans-isomerase
  rplE_0422 50S ribosomal proteins L5, L15, L19, L23
  rpsB_1329 30S ribosomal proteins S2, S5, S14, S16
  pstSII_1045 ABC transporter, substrate-binding protein, phosphate
  325_Syn_WH7803i1973_q360