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. 2011 Jun 23;27(16):2194–2200. doi: 10.1093/bioinformatics/btr381

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© The Author(s) 2011. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 3. — Chimeric alignment showing diffs and votes. This figure shows a region from an alignment generated by UCHIME. Diffs and votes are annotated. The ‘Model’ row indicates the three segments of the alignment which are closer to A, the crossover (X) and closer to B, respectively. Diffs are ‘A’ = diff with Q closer to A in the A segment, ‘a’ = diff with Q closer to A in the B segment, and similarly for ‘B’ and ‘b’. A ‘p’ diff indicates that the parents agree but are different from Q. Votes are ‘+’ (yes), ‘!’ (no) and ‘0’ (abstain), indicating whether the corresponding diff supports or contradicts the model.