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. 2011 Aug 4;6(8):e23009. doi: 10.1371/journal.pone.0023009

Figure 4. Extraction of a Whole Brain Structural Connection Matrix.

Figure 4

A–B. MRI Acquisition: (A) high-resolution T1-weighted image and (B) diffusion images. The T1 is registered on the diffusion images. In every imaged voxel the Orientation Density Function (ODF) is extracted from the diffusion images. C. Whole brain tractography provides an estimate of axonal trajectories across the WM. D. Cortex partitioning into 83 gyral-based parcels using the Freesurfer software (http://surfer.nmr.mgh.harvard.edu). E. Creation of the low-resolution structural connection matrix, representing the fiber density between every pair of the 83 parcels (upper left and lower right blocks: connections in the right, respectively left hemisphere; off-diagonal blocks: inter-hemispheric connections).