Table 1.
Overview of genome wide differences between N2 and CB4856 or CB4858
| Polymorphism | CB4856 | CB4856 × 10-4 SNPs per base |
CB4858 | CB4858 × 10-4 SNPs per base |
|---|---|---|---|---|
| Base | ||||
| Substitutions | ||||
| single | 4926 | 10.6 | 36568 | 5.11 |
| sequential | 476 | 1.02 | 564 | 0.08 |
| Sub total | 5402 | 11.6 | 37132 | 5.18 |
| Insertions | 2024 | 4.34 | 2668 | 0.37 |
| single | ||||
| sequential | 1197 | 2.57 | 0 | 0.00 |
| Ins total | 3221 | 6.91 | 2668 | 0.37 |
| Deletions | 2618 | 5.62 | 2393 | 0.33 |
| single | ||||
| sequential | 2009 | 4.31 | 0 | 0.00 |
| Del total | 4627 | 9.93 | 2393 | 0.33 |
| Inversions | ||||
| 2 bp | 98 | 0.21 | 53 | 0.01 |
| 3+bp | 12 | 0.03 | 23 | 0.00 |
| Total Inv | 110 | 0.24 | 76 | 0.01 |
| Total | 13360 | 28.7 | 42269 | 5.90 |
The total number of bases assayed in CB4856 was 4658922 (4.6465% of the C. elegans reference genome). The numbers of SNPs observed in CB4858 was based on the assay of 77% of the C. elegans reference genome (Hiller et al., 2008).